Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0723 ATGGAAGCAGCACTGCAAGCCTCGATTTTGGGCCGACCCAAATTATTGACTGCTTCAAAACCGTCATTTTTTGTTGTCTCAAATCGTCGAATGAACACTCCAATTAAGTTTTCCTCATTAAATTTTAGGTACCCAAGTGGGATTTCGGTCAATTGTGTTTTCTCTAACTCGTTGAGCTCAAGTCCCAAGTTGACTGGGCCATCTGGAAGGCGATCTGGGTTGAAGGGCGGCGAGAATCCGAGTTCTGCGTCTGGTAATTTGGATTTTTTTGGGGTTTTGTTGAGGCGAGGGGTCGTTTTGGGGGCTATGGTTTGTGGGGTTTTGGTGTTAGGTTGCAGCAGAGTGTTTGCAGTGGAGGGTGTTGTCGATGCCGATTATGGGGTTCTGAGGCGGACTATGGTGGTGTTGAGAGGCGCTTGGCCAAAGACGTTACAGCTCTTACGCGTTTTTAAGGATCAAGGTCTGATTTTGGCTGCGCTTTTGGGTCTCTCTGCATTTTTCTCCATGGCTGAAACTTCAATTACCACACTTTGGCCTTGGAAGGTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACTGTGGTCAATATTGGAGCAACTGCACTAGTCACAGAGGCTGCAACACAAATTTTTGGCGAAGCTGGTATTACTGCAGCAACTGCAGTAATGACTGTTGCAATTTTGCTTCTCACTGAAATTACTCCAAAAAGCCTAGCTGTCCATAATGCCACAGAGGTTGCTAGGTTTGTGGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAAGAAGTGAACCATATGTTACTGAAGAGGAGTTAAAGTTGATGTTGCGAGGAGCGGAATTGAGTGGGGCAATAGAGGAGGAAGAGCAGGATATGATCGAAAATGTGTTGGAGATAAAAGATACACATGTTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGGGGGAGATTCTAGAAAGTTCTATTGTGGGAGATATGGCTCATAAACCTGCATACTTCGTGCCTGATTCAATGTCTGTCTGGAATCTTCTAAGAGAATTTCGCATCAGGAAGGTCCACATGGCTGTTGTTCTCAATGAGTATGGTGGAACTGTGGGAATAGTAACCCTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTCGATGAGAATGATTCAAAAGAAGAGATTCAGAAGAAAACTGGTTATGTTGTAATGAAAGGTGAGGGAATATTTGATGTGGATGCAAATACATCAATTGATCAGCTCTCTGAAGATCTCAATATCAAAATGCCAGAGGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAGAGAATGAAGAATATACAGAGCAAGAATCTGACCGCCAAGAACAGAAGGAGAAGCAGCACATTTTTAAGCTTGAGATATTGGCAGGAAATGCCAGAAAGGTGAGTGCTGTTCGGTTTGAACGGATAAATAATGATGATGCCGCATTGGAGACCAAAGAGGTGACTCGCTTGGTTCCCAAAATCATGAAAAGGAAATGGAGTGACGGCGAGGATTCAGATAGTGCGGATGACAAGGATTCAGATAGTGCGGACAATGATGAGGATGCCCACCAGATGAGACCAGAGGATGGCCTTTCTGATGGCTATGTAATTGCTGAACATAAAGATGATCATGACAGTCATAATGAGCAGTAG 2010 0.4363 MEAALQASILGRPKLLTASKPSFFVVSNRRMNTPIKFSSLNFRYPSGISVNCVFSNSLSSSPKLTGPSGRRSGLKGGENPSSASGNLDFFGVLLRRGVVLGAMVCGVLVLGCSRVFAVEGVVDADYGVLRRTMVVLRGAWPKTLQLLRVFKDQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRSDVTRFLTTILIGTTVVNIGATALVTEAATQIFGEAGITAATAVMTVAILLLTEITPKSLAVHNATEVARFVVRPVAWLSFILYPVGRVVTYLSMGMLKMLGLKGRSEPYVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASATLVDFHELWLTHQYSRVPVFEQRVDNIVGVAYAMDLLDYLQKGEILESSIVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYVVMKGEGIFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFICEVFGYIPRTGESIKVVLENQEENEEYTEQESDRQEQKEKQHIFKLEILAGNARKVSAVRFERINNDDAALETKEVTRLVPKIMKRKWSDGEDSDSADDKDSDSADNDEDAHQMRPEDGLSDGYVIAEHKDDHDSHNEQ* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0723 669 Pfam CBS domain 415 470 IPR000644 -
Vvi19g0723 669 Pfam CBS domain 347 405 IPR000644 -
Vvi19g0723 669 FunFam Magnesium/cobalt efflux protein CorC 328 478 - -
Vvi19g0723 669 Pfam Cyclin M transmembrane N-terminal domain 155 332 IPR002550 -
Vvi19g0723 669 ProSiteProfiles CNNM transmembrane domain profile. 146 332 IPR002550 -
Vvi19g0723 669 SUPERFAMILY FAD-binding/transporter-associated domain-like 490 598 IPR036318 GO:0050660
Vvi19g0723 669 ProSiteProfiles CBS domain profile. 418 476 IPR000644 -
Vvi19g0723 669 Gene3D - 488 591 IPR016169 -
Vvi19g0723 669 Coils Coil 548 570 - -
Vvi19g0723 669 MobiDBLite consensus disorder prediction 59 81 - -
Vvi19g0723 669 MobiDBLite consensus disorder prediction 617 669 - -
Vvi19g0723 669 SMART cbs_1 356 405 IPR000644 -
Vvi19g0723 669 SMART cbs_1 422 470 IPR000644 -
Vvi19g0723 669 SMART CorC_HlyC_2 491 595 IPR005170 -
Vvi19g0723 669 PANTHER HEMOLYSIN-RELATED 148 618 - -
Vvi19g0723 669 CDD CBS_pair_CorC_HlyC_assoc 346 467 IPR044751 -
Vvi19g0723 669 Gene3D - 326 481 IPR046342 -
Vvi19g0723 669 ProSiteProfiles CBS domain profile. 351 412 IPR000644 -
Vvi19g0723 669 Pfam Transporter associated domain 492 594 IPR005170 -
Vvi19g0723 669 SUPERFAMILY CBS-domain pair 334 473 IPR046342 -
Vvi19g0723 669 MobiDBLite consensus disorder prediction 636 669 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0723 - - vvi:100260506 1236.48