Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0719 ATGGATTTTTCTGAGTCCACAGCAGTTGTTTTCAATAGAATTCAAAAACTAGAACCAGAGAATGTTTCAAAGATTATAGGGTATCTTCTTGTTAAGGGTTTTAGTAAGGGAGAAATGATTCGGTTGGCTTTTGGTCCCGATAAGGCGATTCGTATGATAATTGAAGGGGTCAAAATAGAGCTTGGTTTGATTCCAAATCCACCATCTCCAATCTCTCCTCACTTCCCTCCTCTCTCTCCTTCAACTGGTTCTTGGTTCCCTTCATCTTCTCCGTCTCCCGTGAACCGATATCTCCAACATGCTACAGAGCAACTACCAAAAGATTATAGTCTCCAAAGTCAGCCTTTGGGTTTAGAGGAACAGTTAGAACAGGTCAACCCAGCAATTTTAGGAGTTTCCGGTGATTACTATTACCCGGAGACGGCAGTGGAAAATTTGAGTGTGAGGACGGGTCCAAGATCTCTGATTGGTTCGGAATTTCCAGTTAAGTTGGAATTGGAGTTAACAGAGCTCCTGAAATCAAGAAGAGGCAATCCTGTCTCCATTGCCTCTCTGCCTATGATGTATTATGAGAGATATGGTAGGGGTCTTCAGGCTGAAGGGTACCTCACTGAGAGCCAACGACATGGGAAAGCTGGTTATAGTTTGACAAAGCTTCTTGCTCGGTTGAGAACCATTCGACTAATTGACAGGCCTCATGGGCAGCATTCAGTAATTTTGGCAGAAGACGTGCCAAAATACATGGAAAGCCGGAGTGAGAGGAGTGACCCTGGTCCAATTGTAAGTGGTTCCCGGCAGATATATCTGACATTTCCAGCTGAGAGTACTTTTACTGAAGAAGATGTCTCTGACTACTTCAGCACCTTTGGACTGGTTGAGGATGTGAGGATTCCCTGCCAGCAGAAACGGATGTTTGGGTTTGTAACCTTTGACAGTTCTGATACCGTGAAGAGCATTTTGGCCAAGGGAAGTCCACATTATGTTTGTGGGGCTCGTGTTCTTGTGAAACCTTACAGAGAAAAGCCAAGGACTGGTGATAGGAAATATTTAGAGAAATTTGAGTCTTCAATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGATGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAGAGCAAGAGTTTGCACAGGATCTTGAATTTGAGACAAGGCGTCTCTCCAAGCTGCAGCTAGCACGAAATCCTCTGGCCAATCAGCTCCACCATGGCTATTCCTTGGATGAACTAAAAGTCTTGGAAGCACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCATTGGATGTTTCAAACAATGGCTCTACAAGTGATGATAAGCCATGGCGTGCAGTCAACAACCCCATCGATCATAAGAGGTCTTGA 1428 0.4412 MDFSESTAVVFNRIQKLEPENVSKIIGYLLVKGFSKGEMIRLAFGPDKAIRMIIEGVKIELGLIPNPPSPISPHFPPLSPSTGSWFPSSSPSPVNRYLQHATEQLPKDYSLQSQPLGLEEQLEQVNPAILGVSGDYYYPETAVENLSVRTGPRSLIGSEFPVKLELELTELLKSRRGNPVSIASLPMMYYERYGRGLQAEGYLTESQRHGKAGYSLTKLLARLRTIRLIDRPHGQHSVILAEDVPKYMESRSERSDPGPIVSGSRQIYLTFPAESTFTEEDVSDYFSTFGLVEDVRIPCQQKRMFGFVTFDSSDTVKSILAKGSPHYVCGARVLVKPYREKPRTGDRKYLEKFESSMYYPLQYADMDSELHMMPRGMETSRLLRKQIMEEQEFAQDLEFETRRLSKLQLARNPLANQLHHGYSLDELKVLEAHANHSKFPTVVHSNYPLDVSNNGSTSDDKPWRAVNNPIDHKRS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0719 475 Gene3D - 271 344 IPR012677 -
Vvi19g0719 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 321 IPR000504 GO:0003723
Vvi19g0719 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 340 IPR000504 GO:0003723
Vvi19g0719 475 CDD RRM_AtC3H46_like 267 336 IPR034365 -
Vvi19g0719 475 ProSiteProfiles OST-type HTH domain profile. 160 242 IPR025605 -
Vvi19g0719 475 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 461 - -
Vvi19g0719 475 MobiDBLite consensus disorder prediction 450 475 - -
Vvi19g0719 475 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 272 343 - -
Vvi19g0719 475 Pfam OST-HTH/LOTUS domain 163 238 IPR025605 -
Vvi19g0719 475 SMART rrm1_1 266 336 IPR000504 GO:0003723
Vvi19g0719 475 SUPERFAMILY RNA-binding domain, RBD 276 345 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0719 Vvi-Chr19 7816138 7819392 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0719 - - vvi:100243592 624.394