Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0706 ATGGCTGCAAGCCAGAATTTCAGAGATCTTCAATGGGTTCTGCAAGTGATCAAATCAGGAAACATCAGCCTCCATAGCATTTCCTTCTACCTTTCTCAGCCAACTTCAGGCTGCTACCAAGAAACAGAGAACTCCATGAATGTAAACATTTCTAAGGACAGCATTTTGTACTTTTCACAACTCCTGACAGTGTTAGCAACTGCCAAGGACTCCCAAGAATCATTGAGAAACTTGGAGTTTCATCATGTTGAATGGGAAGCGCAGCAACTTCGCAATCTTGGAATGGTGCTGGAGAATAACTTGAACATCAAGCAGCTTATGTTTAGGAGAAACAGGCTCAATGTGGAGTGTTTATGGGAGTTATCTGAAATTCTGAAGAGAAATGGAGTCATCAAGGAAATCATGTTCTCTGAATCAGCTATTGGGGCTGCTGGAGCTGGGTTACTTGCTTCTGCACTTAAGGTGAATGATAGCTTGGAAGAGTTGCAGATATGGGAAGACTCAATTGGCTCAAAGGGGGCAGAGGAGCTCTCAAAGATGATTGAAGTAAACTCCACTCTGAAGCTGTTGACAATCTTTGACTCCAACTCAATCACAGCAACTCCCCTAATTTCTGCAGTTTTAGCAAGGAACAGAGCGATGGAAGTTCATATCTGGAGTGGAGAAAAAGGAGAAAAGAGTTCCAAGGTTGTTGAGTTTGTACCCGAGAACAGCACGCTTCGAATTTATAGGCTTGACATTTCAGGTGCTTGCAGAGTTGCTTGTGCTCTGGGGTGGAACTCAACAGTGAAATCACTTGATCTGACTGGAGTCCGGTTAAGATCCCGGTGGGCTAAGGAGTTCCGGTTGGTTTTGGAACAAAACCAGAGCCTCAAAGAAGTGACCCTATCAAAAACTTGCCTAAAGGACAAGGGAGTTGTATATGTTGCAGCTGGGCTTTTCAAGAACCAGAGTTTGGAAAGCTTGTACCTAGATGGAAACTGGTTTACTGGGATAGGAGTAGAGCATTTGCTCTGCCCTTTGAGCCGGTTCTCAGCTCTGCAATATCAAGCAAACGTGACTCTGAAGTCGGTAACTTTTGGAGGCGGAAGAACAAAGATAGGAAGGGATGGGCTTGCAGCCATCTTACAGATGCTAACAACCAACCAAAGCGTGACGCGGTTGGGGATACAGGATGATGAGAGCTTGAGACAGGAAGATATCGTCAAAATCTTCAGGAGCTTGGAAAGGAATGCCACTTTGAGACACTTGTCCTTGCAGGGATGCAAAGGGGTCGGAGGAGAGCTGGTGCTGCAGACAATAATGGAAACCTTGCAGGTAAATCCTTGGATTGAGGACATTGATCTCACAAGAACACCACTTCAGAATTCAGGTCAGACAGATGGAATTTACCAAAAGTTAGGCCAGAATGGGAGGACAGAGCCTGAAATTGACCTGCTCAAGGACATGCCACTAACAGTGCCCAAGAGCTGCAGAGTCTTCTTTTGTGGCCAAGAATATGCAGGTAAAACTACACTTTGTAATTCCATTTCACAGAATTTCTCGTCTTCGAAGCTTCCCTATATGGATCAAGTGAGAACTCTAGTGAACCCTGTTGAGCAAGCTGTTAGAACAGCAGGAATGAAAGTAAAAACCTTCAAAGATGAAGACACAAAGATTTCTATATGGAATCTTGCTGGTCAGCATGAGTTCTATTCCCTTCATGACCTCATGTTCCCGGGGCATGGTAGTGCATCATTCTTCTTGATTGTATCCAGTCTGTTCAGGAAACCAACCAACAGAGAATCAAAAACCCCAGCAGAGATAGAGGAGGACCTTCAGTATTGGCTCAGGTTCATAGTCTCCAACTCAAGAAGAGCAGCACAACAATGTATGCTGCCAAATGTAACTGTGGTCCTCACACACTATGACAAAATCAATCAACCATCACAGGACTTCCAAGCTACTGTGAATTCAATTCAGAGATTGAGAGACAAGTTTCAAGGTTTTGTTGACTTCTATCCAACCGTGTTCACGGTCGATGCTAGATCATCTGCCTCAGTGAGTAAACTCACCCATCACCTTCGAAAGACGAGCAAGACCGTGCTCCAAAGAGTCCCCAGGGTTTATGAGCTTTGCAATGATCTGATACAAATTCTCTCAGACTGGAGAACAGAGAACTATAATAAACCAGCCATGAAGTGGAAAGAGTTTGATGAGCTATGCCAGGTTAAGGTTCCATCCTTGAGAATCCGATCAAGACATGACAATAAAGAAAAGGTAGGGATGAGGAGGAGGGCTATTGCTAATTGTCTTCATCACATAGGCGAGGTGATTTACTTCAATGAGCTGGGGTTTCTGATCTTAGATTGTGAGTGGTTCTGCGGTGAAGTACTTGGCCAACTAATACGACTAGATGCTAGAAAGCAAAGCACAACAGAGAATGGATTCATCACCAGGAAAGAATTGGAGAAGATTCTTAGAGGAAGTCTACAAAGTCAGATTCCTGGAATGGGATCAAAGGTTTTTGAGAACTTGGAGGCCAGTGACCTTGTAAGGATGATGCTGAAACTGGAACTTTGTTATGAACAAGATCCATCAGACCCCAATTCACTGCTACTGATCCCCTCAATCCTAGAAGAAGGCAGGGGAAGGCCACAGAGATGGCAGTTGATTGCACCCGATTGCGTTTATTCAGGGAGACATCTTGAGTGTGATGATTCAAGCCACATGTTCCTCACGCCAGGCTTCTTTCCCCGTTTACAGGTGCATCTCCACAACAGAGTCATGGGGTTGAAGCACCAACATGGAGCAACCTACAGTCTTGAGAAGTACCTCATCTTGATAAATATTAATGGTATCTATGTCAGAATCGAACTTGGAGGGCAGTTGGGTCACTACATTGATATCCTTGCGTGTTCCACCAAGAACCTCACAGAAACCTTAAGACTCTTCCAACAGCTCATAATCCCAGCAATCCAAAGCCTCTGCCATGGCGTTACGCTGCATGAAAGTATTATCAGGCCGGAATGTGTCAGAAATCTAATGCCCCCAAGATACCGAAAAACCCAATTTGTTCCTCTACAAGTATTGAAACAAGCACTACTTTCGGTTCCTGCAGAGGGTATGTATGATTATCAGCACACTTGGGCTTCAGTTTCAGACTCTGGCAGACCTATTCTGAGAGCCGGGTTTGATTTTGCTCGAGACCTCCTATCAGATGATGATTTTCGGGAAGTGCTTCACCGGAGGTATCATGACCTGTACAACCTTGCAGTGGAACTGCAAGTCTCACCAGAGGCCAACACAGATGGACTAGATAATCCTGCATCTGCCATGGAAGAACAAGACAAAGTTGAACCAACATTTGGTGGTATTGCTAAGGGGGTGGAAGCAGTTTTGCAGAGACTGAAGATCATTGAACAGGAAATCAGAGATTTGAAGCAAGAGATCCAAGGGCTGAGGTACTATGAACATAGACTCCTAATTGAGCTCCACCGCAAAGTGAACTACCTGGTGAACTACAACGTCCAACTCGAGGAAAGGAAAGTGCCTAACATGTTCTACTTTGTTAGAACAGAAAACTACTCAAGGAGATTGGTCACCAACATGATTTCTGGAATGACTGCACTTAGGCTGCACATGTTATGCGAATTCAGGCGGGAAATGCATGTCGTTGAAGATCAGATGGGGTGTGAAATGATGCACATTGACAACATGACTGTGAAGAGCCTGGCTCCATACATGAAGAAGTTCATGAAACTGCTGACATTTGCTCTCAAGATTGGAGCCCATTTAGCAGCTGGTATGGGAGAGATGATCCCAGATTTGAGCAGAGAAGTTGCTCATCTTGTTGAACCTTCACTCATGTATGGGGCAGCAGGGGCTGTTGCAGCTGGGGCTGTTGGGGCTGCAGCTGTTTCACGTGTAGCTGGTAGCAGCAGCAGAAACAGGGCCAGGTCCTTGGGTGGAGAAAGTACAAGGGACTTTCACCAAGATCTAAGAGCAGCACAGCAATGGGTTGTGGACTTCTTAAGGGACAGGAGGTGCTCAACTGGAAGAGAAATTGCAGAGAAGTTCGGACTATGGAGAGTGAGATACAGAGATAACGGACAAATTGCATGGATATGTCGAAGGCATATGAACACAAGATCACATGAAATAATTGAGGTTCCCATTTGA 4161 0.4494 MAASQNFRDLQWVLQVIKSGNISLHSISFYLSQPTSGCYQETENSMNVNISKDSILYFSQLLTVLATAKDSQESLRNLEFHHVEWEAQQLRNLGMVLENNLNIKQLMFRRNRLNVECLWELSEILKRNGVIKEIMFSESAIGAAGAGLLASALKVNDSLEELQIWEDSIGSKGAEELSKMIEVNSTLKLLTIFDSNSITATPLISAVLARNRAMEVHIWSGEKGEKSSKVVEFVPENSTLRIYRLDISGACRVACALGWNSTVKSLDLTGVRLRSRWAKEFRLVLEQNQSLKEVTLSKTCLKDKGVVYVAAGLFKNQSLESLYLDGNWFTGIGVEHLLCPLSRFSALQYQANVTLKSVTFGGGRTKIGRDGLAAILQMLTTNQSVTRLGIQDDESLRQEDIVKIFRSLERNATLRHLSLQGCKGVGGELVLQTIMETLQVNPWIEDIDLTRTPLQNSGQTDGIYQKLGQNGRTEPEIDLLKDMPLTVPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYMDQVRTLVNPVEQAVRTAGMKVKTFKDEDTKISIWNLAGQHEFYSLHDLMFPGHGSASFFLIVSSLFRKPTNRESKTPAEIEEDLQYWLRFIVSNSRRAAQQCMLPNVTVVLTHYDKINQPSQDFQATVNSIQRLRDKFQGFVDFYPTVFTVDARSSASVSKLTHHLRKTSKTVLQRVPRVYELCNDLIQILSDWRTENYNKPAMKWKEFDELCQVKVPSLRIRSRHDNKEKVGMRRRAIANCLHHIGEVIYFNELGFLILDCEWFCGEVLGQLIRLDARKQSTTENGFITRKELEKILRGSLQSQIPGMGSKVFENLEASDLVRMMLKLELCYEQDPSDPNSLLLIPSILEEGRGRPQRWQLIAPDCVYSGRHLECDDSSHMFLTPGFFPRLQVHLHNRVMGLKHQHGATYSLEKYLILININGIYVRIELGGQLGHYIDILACSTKNLTETLRLFQQLIIPAIQSLCHGVTLHESIIRPECVRNLMPPRYRKTQFVPLQVLKQALLSVPAEGMYDYQHTWASVSDSGRPILRAGFDFARDLLSDDDFREVLHRRYHDLYNLAVELQVSPEANTDGLDNPASAMEEQDKVEPTFGGIAKGVEAVLQRLKIIEQEIRDLKQEIQGLRYYEHRLLIELHRKVNYLVNYNVQLEERKVPNMFYFVRTENYSRRLVTNMISGMTALRLHMLCEFRREMHVVEDQMGCEMMHIDNMTVKSLAPYMKKFMKLLTFALKIGAHLAAGMGEMIPDLSREVAHLVEPSLMYGAAGAVAAGAVGAAAVSRVAGSSSRNRARSLGGESTRDFHQDLRAAQQWVVDFLRDRRCSTGREIAEKFGLWRVRYRDNGQIAWICRRHMNTRSHEIIEVPI* 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0706 1386 Gene3D - 490 694 IPR027417 -
Vvi19g0706 1386 Pfam C-terminal of Roc, COR, domain 719 922 IPR032171 -
Vvi19g0706 1386 PANTHER PROTEIN TORNADO 1 1 1385 - -
Vvi19g0706 1386 Pfam Leucine Rich repeat 315 337 IPR001611 GO:0005515
Vvi19g0706 1386 SUPERFAMILY RNI-like 244 458 - -
Vvi19g0706 1386 SMART LRR_RI_2 128 155 - -
Vvi19g0706 1386 SMART LRR_RI_2 316 343 - -
Vvi19g0706 1386 SMART LRR_RI_2 288 315 - -
Vvi19g0706 1386 SMART LRR_RI_2 156 183 - -
Vvi19g0706 1386 Coils Coil 1123 1150 - -
Vvi19g0706 1386 Gene3D Ribonuclease Inhibitor 348 475 IPR032675 -
Vvi19g0706 1386 Gene3D Ribonuclease Inhibitor 52 217 IPR032675 -
Vvi19g0706 1386 Gene3D Ribonuclease Inhibitor 232 347 IPR032675 -
Vvi19g0706 1386 SUPERFAMILY RNI-like 64 215 - -
Vvi19g0706 1386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 681 IPR027417 -
Vvi19g0706 1386 Pfam Ras of Complex, Roc, domain of DAPkinase 492 618 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0706 - - vvi:100246876 2711.79