Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0694 ATGCTGATGTTCTTCTTGGTGTCGACCAGTAGTGTTGTTCTAGGAAAACCGGCGGTTTTGAATGTGAAAGATTATGGTGCAGTTGCAGATGGGAAGACTGACAACAGTCGGGCTTTTCTGGAGGCATGGGAAGCAGCATGTGAACAGCAAGGAACGAGTGTTATCACTGTTCCAAGAGGAGGAAAATACTACGTGCGCCAAGTCGCATTCACAGGACCCTGCAAAGGCTCCATAACGTTCCTAATTCAGGCCGATCTTTATGCCCCTACTGATAAAAGTTCTCACACTCTTACGTACTGGATCAAGTTCGGGTATGTGGACTATTTGACTATCGCCGGACTTGCCAATCTGTATGGCGGAGGACCCTCTGCTTGGCCTTACAAGGGCTGCGGACAAGGTCAGGAGTGCTTACAAGTTGTTCCCCATTCACTGAGATTGGAGTTCGTCAATCATGCATGGGTTCATCATATAGGATCAATCGATGCTAAAGATAAGCACATCAGCATATTCCAATGTCAGGACGTGACGCTTAGTGATATTAGGACAACGGCCCCCCACGACAGCCCTAATACAGATGGAGTACACATAGCAGTATCGGAGAGAGTTAAGATTTTGGATTCGACATTTAACACCGGAGATGATTGCGTAGCCATCTTTTCTGGAAGCAAGGATGTGAATATCAGCCAGAGTATTTGTGGCCCGGGGCATGGGTTTAGCATTGGGAGCATGGGCAAATTCCCAGATGAAGACCCCATAACCAAAATAAATATACGCAACTGCACAATTAGCCATACTGACAACGGTTTTAGGATTAAAACATGGGCCGTCTCCTCCTACCCGACCTTTGCTTCCGATATCACTGTTCAAGATGTTATGATGGATAACGTCCGCAATCCCATCATCATTGATCAACATTATTGCCCTCGGGGAGGTTGTGATCCGACGGTTGAGTCACAAGTTCAGATCAAAAACCTTCAGATAAAGCGAATATGGGGGACTTCAACCACGGAAACTGCAGTGAATCTCCAGTGCAGCAGCCAAAAACCATGTCAGGGTGTTGAGCTTGAAGACATCCTTTTACTTTTCAGAAATCCCGAAGGTGGCAAACTACAACCTGCAGTTTCCTCATGTGCCTATGTGGTGGGCTCCTCCCGTGGCAAACAGGTCCCTAAGCCTTGCATATAG 1185 0.47 MLMFFLVSTSSVVLGKPAVLNVKDYGAVADGKTDNSRAFLEAWEAACEQQGTSVITVPRGGKYYVRQVAFTGPCKGSITFLIQADLYAPTDKSSHTLTYWIKFGYVDYLTIAGLANLYGGGPSAWPYKGCGQGQECLQVVPHSLRLEFVNHAWVHHIGSIDAKDKHISIFQCQDVTLSDIRTTAPHDSPNTDGVHIAVSERVKILDSTFNTGDDCVAIFSGSKDVNISQSICGPGHGFSIGSMGKFPDEDPITKINIRNCTISHTDNGFRIKTWAVSSYPTFASDITVQDVMMDNVRNPIIIDQHYCPRGGCDPTVESQVQIKNLQIKRIWGTSTTETAVNLQCSSQKPCQGVELEDILLLFRNPEGGKLQPAVSSCAYVVGSSRGKQVPKPCI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0694 394 Pfam Glycosyl hydrolases family 28 47 360 IPR000743 GO:0004650|GO:0005975
Vvi19g0694 394 Gene3D - 8 391 IPR012334 -
Vvi19g0694 394 PANTHER - 18 363 - -
Vvi19g0694 394 SMART pbh1 172 198 IPR006626 -
Vvi19g0694 394 SMART pbh1 252 273 IPR006626 -
Vvi19g0694 394 SMART pbh1 199 220 IPR006626 -
Vvi19g0694 394 SMART pbh1 222 242 IPR006626 -
Vvi19g0694 394 SMART pbh1 283 304 IPR006626 -
Vvi19g0694 394 FunFam Pectin lyase-like superfamily protein 9 391 - -
Vvi19g0694 394 SUPERFAMILY Pectin lyase-like 4 394 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0694 Vvi-Chr19 7601640 7603102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0694 2 393 Glycoside Hydrolase AT2G33160 41.013 1.07e-102 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0694 K01213 - vvi:100267512 816.224