Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0693 ATGTCCAAGCTCCGGCAGGTCATTCTCCTGTTTCTTCTCCACTCAGTTGCTTTGGTCTCTGCTCAGGGATCTACAAACGGAACCAGCTCTTGGCAGACACTCAACGGAAATGCACCTTTGGTCATAGCACGTGGTGGGTTTTCAGGGCTATTTCCTGATTCTAGTTCAGCTGCATATAGTTTGGCATTAATGACCAGTTTGTCCAATGTGGTCCTCTGGTGTGATGTGCAATTAACAAAAGATGGAGCTGGAATTTGCTTTCCTGATATGAAGCTAGAGAATGCTTCCGATATTTCAATTGTTTTCAAAAACAGGAATAATGTCTACCTTGTCAATGGAGTCTCTACGCCAGGATGGTTTTCTGTTGATTTTACACTTACTGACCTCGAAACTGTTGCTTTAAATCAAGGAGTTTATTCTCGAAGTGGTAGGTTTGATGGTAATCTTTTCCCAATTCTTACCGTTCAAGAGATGGTTAAGCTAATAAGGCCACCAGGTTTATGGTTGAATCTTCAGCATGATGTATTCTATACAAAACACAATCTGAGTATGAGAAACTTTGTACTTTCTGTATCTAAAAGTGTTATAGTTGATTATATCTCATCACCAGAGGTGGCTTTTCTGAGAGGTGTCTCGCAACGATTTAAAGCAACGAAGACGAAATTGATCTTCCGATTTCTAGAAAAAGAGGAAACAGATCCCTCAACCAACCAAACTTATGGTTCTCTCCTAAATAATCTTACATTCATAAAGACATTTGCCTCTGGAATTCTTGTTCCCAAAGGTTACATATGGCCTGTGAATAAGAATTCATATTTGGAATCTTCTACCTTAGTTGTACAAAATGCTCATAAAGAAGGATTGGAAGTTTTTGGATCAGATTTTATCAACGATATTCCTTTTAGCTACAATTACAGTTATGATCCAATAGCTGAGGTCTTGAATTTCATTGACAATGATGCCTTCTCGGTCGATGGTGTACTATCTGACTTCCCAATAACTCCATCGGCAGCCATAGATTGCTTTGCTCACATTGGCAAAAATGCTTCAGGACAAGAAAAGCCTTTAATTATCTCATACAATGGAGCAAGTGGAGACTACCCTTCTTGTACTGATTTGGCATATACCAAAGCCATTTCAGATGGTGTAGATGTTCTTGATTGTAATGTTCAAATGACAAAGGATGGCACACCAATTTGCTTAAGCTCTATTAATCTTATGGATAGCACAAAAGTTGCCCAAACACCTTTCAGCACTTTTACAACAACTATTACAGAGCTTCAAAAAGGCAGTGGAATATTTACCTTCAACCTCACTTGGGAGGATATTCGTAGCTTGACCCCGGCAATATCAAACCCATATTCAACTTTCAGATTGTCCCGAAATCCAGCAGCCAAAACTGCTGGGAAATTGGTGTCATTGTCAGACTTTTTGAGCATTGCAAAAGAAGCAAATTCTCTTTCTGGTGGTGTCTTGATCGGCATTGAGCATGCAGCCTTCCTTGTGAAGGTGGGATTAAGCGTCACAGATGCAGTCCTTGACGCCTTGAGCAAAGCTGGTTATGATAATGTAACCACACCCAGAGTAATGATTCAGTCCACCAACAGTTCTGTGCTGAAGGAGTTCAAGGAAAAGAAGAAGAATTATGAGCTTGTGTACAGAGTTGATGAAAATATCCGTGATGCCTCTGATGCAACCATTGAGGACATCAAGAAATTTGCCACTTCTGTGGTTATCAGCAAAGATTCCATCTATCCTGAGAACAAGGCATTCATCACTGGTGCTACGGATATTGTATCAAGGCTCAAGAAGAATAATCTCCCCGTTTATGTACAACGCTTTGATAATGAGTTTATATCTCAGGCATGGGACTTCTTCTCAGATGCAACCGTAGAAATCAACTCATTTGTCACGGGAGCTGGAATTGATGGTGTAATCACAAGCTTCCCTCAAACAGCTGCTTCATATAGAAAGAACCGATGCTTAAAGTACAAGAATGCACCGTCATACATGAGTCCTGTTCAGCCTGGCAGTCTCATGCAAGTCATCACTAGCGACGACATGCCACCTGCTCTGGCTCCATACCCGGTGCTGACAGAGTCTGATGTGGCTGAACCTCCACTACAAGAAGTCGCACCAGCTACCCCGACTTCCAGCACAAACGCTGGAACTACAGCACCTGCTCCCACCTCACCAAACGGGCAACCTAGAATTGCCACATGCATTGTCCTGTCCAATCTTGCTGTGCTCCTTGTGGCCGTTCTGCTGCTATGA 2274 0.4195 MSKLRQVILLFLLHSVALVSAQGSTNGTSSWQTLNGNAPLVIARGGFSGLFPDSSSAAYSLALMTSLSNVVLWCDVQLTKDGAGICFPDMKLENASDISIVFKNRNNVYLVNGVSTPGWFSVDFTLTDLETVALNQGVYSRSGRFDGNLFPILTVQEMVKLIRPPGLWLNLQHDVFYTKHNLSMRNFVLSVSKSVIVDYISSPEVAFLRGVSQRFKATKTKLIFRFLEKEETDPSTNQTYGSLLNNLTFIKTFASGILVPKGYIWPVNKNSYLESSTLVVQNAHKEGLEVFGSDFINDIPFSYNYSYDPIAEVLNFIDNDAFSVDGVLSDFPITPSAAIDCFAHIGKNASGQEKPLIISYNGASGDYPSCTDLAYTKAISDGVDVLDCNVQMTKDGTPICLSSINLMDSTKVAQTPFSTFTTTITELQKGSGIFTFNLTWEDIRSLTPAISNPYSTFRLSRNPAAKTAGKLVSLSDFLSIAKEANSLSGGVLIGIEHAAFLVKVGLSVTDAVLDALSKAGYDNVTTPRVMIQSTNSSVLKEFKEKKKNYELVYRVDENIRDASDATIEDIKKFATSVVISKDSIYPENKAFITGATDIVSRLKKNNLPVYVQRFDNEFISQAWDFFSDATVEINSFVTGAGIDGVITSFPQTAASYRKNRCLKYKNAPSYMSPVQPGSLMQVITSDDMPPALAPYPVLTESDVAEPPLQEVAPATPTSSTNAGTTAPAPTSPNGQPRIATCIVLSNLAVLLVAVLLL* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0693 757 ProSiteProfiles GP-PDE domain profile. 355 657 IPR030395 GO:0006629|GO:0008081
Vvi19g0693 757 Gene3D Phosphatidylinositol (PI) phosphodiesterase 353 656 IPR017946 GO:0006629|GO:0008081
Vvi19g0693 757 Gene3D Phosphatidylinositol (PI) phosphodiesterase 37 337 IPR017946 GO:0006629|GO:0008081
Vvi19g0693 757 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 353 657 - -
Vvi19g0693 757 Pfam Glycerophosphoryl diester phosphodiesterase family 46 291 IPR030395 GO:0006629|GO:0008081
Vvi19g0693 757 Pfam Glycerophosphoryl diester phosphodiesterase family 361 652 IPR030395 GO:0006629|GO:0008081
Vvi19g0693 757 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 8 751 - -
Vvi19g0693 757 CDD GDPD_SHV3_repeat_1 39 338 - -
Vvi19g0693 757 CDD GDPD_SHV3_repeat_2 355 656 - -
Vvi19g0693 757 SUPERFAMILY PLC-like phosphodiesterases 354 657 IPR017946 GO:0006629|GO:0008081
Vvi19g0693 757 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 37 338 - -
Vvi19g0693 757 MobiDBLite consensus disorder prediction 710 733 - -
Vvi19g0693 757 ProSiteProfiles GP-PDE domain profile. 39 339 IPR030395 GO:0006629|GO:0008081
Vvi19g0693 757 MobiDBLite consensus disorder prediction 712 733 - -
Vvi19g0693 757 SUPERFAMILY PLC-like phosphodiesterases 37 337 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0693 Vvi-Chr19 7546763 7554850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0693 7 757 Receptor kinase-like Gene Family AT4G26690 56.516 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0693 - - vvi:100246982 1452.96