Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0690 ATGGTTACAGACGAAGCGATAGCAGAAGCCCTGGACTCCCTCATACGCGAATCAACCCCGTCTCAATTCACCTCCATAAACGGTGTTGTTTTACAGCTCGAGTCCAAGCTAGGGCTAAATCTGTCCCACAAGCTCGAGTTCATTCGCTCCCAGATCCATCTCTTCTTCCAATCCCACCAGCCACAGTCACAACCGCCGCCCCCGCAGCCACCCTCACAACAGCAACCCCCGAAAGACCATTTTACCCTACAGCAAGCAACCAATTTCTCAACTGGCCCTCCCAATTTCGCCCCTCACCGCACCGAGGACCTCAATTTCCGGCGCGACCCAACTCCTGCCCCTCCGGCCGAGCCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAGTGCTCGAGCTGGAACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCAAGTAACAAAAGGAAGATAATTTGCAACGATGAGCTACGTTTGGTATTTGAGACAGACAGTACTGACATGTTCAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAAACAGTCAGGTGAACAGTCGAAGAAATTAAAGGTTGATGCAGGAGCTGGAACAAAAAGTTCTGAATCTGGGCCCTATGTAGTAATATCTGAAGCACTTGCAAATTTTTTTGGTACTAGTGGAAGGGAGATGCTTCAGTCCGAGGTGTTAAGACGTGTTTGGGAATACATAAAGGTCAATCATCTGGAGGATCCTCTAAATTCAATGGTGATACTTTGTGATGCAAAGCTTCAAGAGATTTTTGGATGTGAGAGCATTTCTGCATTAGGGATACCTGAAATCTTGATGCGCCATCATCTATGTAAGAGATCATGA 996 0.4819 MVTDEAIAEALDSLIRESTPSQFTSINGVVLQLESKLGLNLSHKLEFIRSQIHLFFQSHQPQSQPPPPQPPSQQQPPKDHFTLQQATNFSTGPPNFAPHRTEDLNFRRDPTPAPPAEPTGGPVAVPEAPPQESARAGTKRRGGPGGLNKVCGVSPELQTIVGQPALPRTEIVKQLWAYIRRNNLQDPSNKRKIICNDELRLVFETDSTDMFKMNKLLAKHIIPLEPTKQSGEQSKKLKVDAGAGTKSSESGPYVVISEALANFFGTSGREMLQSEVLRRVWEYIKVNHLEDPLNSMVILCDAKLQEIFGCESISALGIPEILMRHHLCKRS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0690 331 Gene3D SWIB/MDM2 domain 142 231 IPR036885 -
Vvi19g0690 331 Gene3D SWIB/MDM2 domain 244 331 IPR036885 -
Vvi19g0690 331 MobiDBLite consensus disorder prediction 61 75 - -
Vvi19g0690 331 SMART swib_2 147 226 IPR019835 -
Vvi19g0690 331 SMART swib_2 250 331 IPR019835 -
Vvi19g0690 331 CDD SWIB-MDM2_like 254 325 - -
Vvi19g0690 331 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 254 326 - -
Vvi19g0690 331 Pfam DEK C terminal domain 2 56 IPR014876 -
Vvi19g0690 331 SUPERFAMILY SWIB/MDM2 domain 139 226 IPR036885 -
Vvi19g0690 331 CDD SWIB-MDM2_like 151 221 - -
Vvi19g0690 331 ProSiteProfiles SWIB/MDM2 domain profile. 146 223 IPR003121 -
Vvi19g0690 331 ProSiteProfiles SWIB/MDM2 domain profile. 249 328 IPR003121 -
Vvi19g0690 331 MobiDBLite consensus disorder prediction 111 125 - -
Vvi19g0690 331 MobiDBLite consensus disorder prediction 58 150 - -
Vvi19g0690 331 SUPERFAMILY SWIB/MDM2 domain 245 326 IPR036885 -
Vvi19g0690 331 Pfam SWIB/MDM2 domain 151 221 IPR003121 -
Vvi19g0690 331 Pfam SWIB/MDM2 domain 255 325 IPR003121 -
Vvi19g0690 331 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 57 IPR014876 -
Vvi19g0690 331 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0690 Vvi-Chr19 7512908 7516549 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vvi19g0690 SWIB 8.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0690 K15223 - vvi:100264067 617.461