Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0676 ATGAGCATAGTGCCCAAAGAGACAATTGAGGTCATTGCACAAAGTATAGGAATTTCAAATTTCTCGCCCGATGTTGCTCCGGCTCTTGCAACCGATGTTGAGTACCGGGTGCGCGAAATCATGCAGGAGGCAATCAAATGCATGCGCCACTCAAAGAGGACTATCTTGACAGTAAATGATGTGGATAGTGCACTCAAGCTAAGAAATGTGGAGCCACTTTATGGCTTCACCTCTGGAGGTCCTAGGCAGTTTAAAAGAGCTGCTGGACATAAAGATTTGTTCTATGTTGATGACAAGGATGTAGAATTTAAAGACTTGATTGAAGCACCCTTACCAAAAACACCTCTAGATACTGGAGTTATCACTCACTGGCTAGCTATTGAAGGAGTGCAACCTGCAATTTCTGAAAATGCTCCAATTGAAGCACTTGCTGTGCCTTCTGACAACAAAAAATCTGAATACAAAGAGGATGGGCTTCCTGTGGACACCAAATTACCTGTTAAGCATGTACTTTCAAGGGAGCTTCAGCTTTACTTTGACAAAATCAAAGAGCTTACCCTGAGTAGATCTGATTCTATCCTATTTAAAGAAGCATTAGTGAGCTTGGCAACAGACTCAGGAATTCATCCTTTAGTTCCTTATTTTACATATTTCATTGCTGATGAGGTCACACGGAATTTGAATGATTTCTCTATCCTGTTTGCTTTGATGCGTGTTGCCCGTAGCCTTCTCCAAAACCAGCAAATACACATAGAACCTTATCTACACCAATTGATGCCATCTATTATTACTTGCCTTGTTGCGAAAAGGTTGGGGAGTAGATTCTCTGACAACCACTGGGAGCTTAGAAGCTTCACAGCTAACCTGGTCGCTTCAGTATGCAAGAGATATGGGCATGTTTATCATAACCTCCAGCCACGTGTGACAAGGACTCTGCTCCATGCTTTCTTGGACCCAACAAAAGCATTGCCTCAACATTATGGGGCAATTCAGGGGTTGGCAGCATTTGGACCCAGTGTGGTTCGCTTGCTTATACTGCCTAATCTTGAGCCATACTTGCGACTTCTTGAGCCAGAAATGCAGCTTGAGAAGCAAAAGAATGGGATGAAGAGACATGAAGCCTGGCGTGTATATGGAGCCTTACTGTGTGCTGCTGGTACATGCATGTATGATCGGCTGAAGACATTCCCCAATTTGCTATCTCCGCCAACACGGGCCATCTTGAAGAGCAATAAAAAAATCTTGCCTACAAAACCAAGCAAACGCAAAGCAAGCACAGATAACTTAATGCAACAGCCACCGCTCAAGAAATTAGCAACAGATGGCTCAATGGGCGTTATGCCAATTAACTCCCTGGCAGTTGACAAGCAAGGGTTAACAGGAGGATTTTCTACTTCAACTGCTGTAGGAAGTTCTGATGTTGGTCTGTCATCAATGTCCCAGCAGTTAGCTAGTGAGAACATATCAGGAGGTAGAAGAGAGGTCGGTACTCGAGCCCTAAAAGCATCAGCTGTTCTTGCTCAGGCTTGGAAGGATGTCAATGCTGGGCAATTGTCGGCGTCATTGTTTGAATATTTTGGTGAAAGTATGTTTTGCTTCACTCCCTCACCTGAGTTGTCCCTGTTCTTGTAA 1632 0.4393 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVNDVDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGVITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFDKIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVARSLLQNQQIHIEPYLHQLMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGHVYHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPEMQLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKPSKRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGLSSMSQQLASENISGGRREVGTRALKASAVLAQAWKDVNAGQLSASLFEYFGESMFCFTPSPELSLFL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0676 543 SMART TAF_cls 2 68 IPR004823 -
Vvi19g0676 543 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Vvi19g0676 543 Pfam TATA box binding protein associated factor (TAF) 1 66 IPR004823 -
Vvi19g0676 543 CDD TAF6C 168 384 IPR011442 GO:0006367
Vvi19g0676 543 Gene3D Histone, subunit A 1 67 IPR009072 GO:0046982
Vvi19g0676 543 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 541 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Vvi19g0676 543 Gene3D - 167 372 IPR046344 GO:0006367
Vvi19g0676 543 FunFam transcription initiation factor TFIID subunit 6 167 372 - -
Vvi19g0676 543 SUPERFAMILY Histone-fold 4 76 IPR009072 GO:0046982
Vvi19g0676 543 SUPERFAMILY ARM repeat 201 391 IPR016024 -
Vvi19g0676 543 Pfam TAF6 C-terminal HEAT repeat domain 262 349 IPR011442 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0676 Vvi-Chr19 7379086 7385914 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0676 K03131 - vvi:100265835 1066.6