Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0673 ATGGGTCTCTCCTCAAATCTTATGGCGCCAGCTGCTTTCTTCATTGTGTTAGCCCTTTTTTCTGTTCCTACGGATGCCCAAATTAAATCCGATGAAGGATTCATTTCTGTGTTCATATCCAGTAAGGGGCTTGGTTTTGTCAAGGATTTGTTAATGCACAAAGCTGTTTCCTCTCTCACCCCAATCGAAATACAGCCTATCGAAAAGATTGTGAAGATCCCACTTGTTGGCCAAGTTGACATTCTTCTTTCCAACATCACTATCCTTAGTGTGGGTGTGGGTACTTCATATGTTAGTTCGGGAGGGGCTGGTGTGGTTATAGTTGCTTCCGGTGGTACTGCCAATATGAGTATGAATTGGAAGTATTCTTATGATACTTGGTTGTTTCCAATTTCAGATAAAGGTGCTGCCTCGGTTCTGGTTGAAGGCATGGCCATGGAGCTTACTCTAGGATTGAAGGACCAGAATGGAACTCTAAGTCTGTCTCTCTTGGACTGGGGATGTTTCGTGAAAGATATCTTTGTGAAGTTGGATGGTGGGGCAACTTGGTTTTATCAAGGGCTGGTGGATGCTTTCAAAGAGCAAATAGCCTCTGCAGTTGAAGATTCTGTTTCCAAAAGAATAAGAGAGGGAATTATAAAGCTTGATTCCTTATTACAATCTGTTCCAAAAGAAATACCAGTAGATCATGTTGCTGCTCTGAATGTTACTTTTGTGAAGGACCCTGTATCAAGTAATTCTTCCATTGACTTTGAGATTAACGGGTTATTCACAGCAAAGGATGGCATTCCAGCTCCCACCAATTACCATAAAAAACATCGAGCTCCCGTTTCCTGCACAGGTCCAGCCAAGATGATTGAGATGTCATTAGATGAAAATGTTTTTAACTCTGCAACTTCTGTTTACTTCAAAGCAGATTTTATGAGCTGGATTGTTAACAAAATGCCAGATCAGTCTCTTTTGAACACAGCCGGATGGAAATATATTGTTCCTCAACTCTACAATCAGTACCCAGATGATGGTGTGAACCTGAATATTTCTGTATCTTCTCAACCAATGTTAAAAATTGCAGACGATAAAGTTGATACAACCATTTACTCAGATATGATAATTGATGTTTTGGATTCTGGTGAAGTAATTCAAGTGGCGTGCATCTCATTGGTTATTAATGCTACTGGCTCTATACAAATTTCAAAGAACAACCTCACTGGTAGCTTTGGGTTGACTGAATTTACTATGTCCTTGAAATGGAGTAACATTGGTGACTTGGACATGCACCAAGTTCAGGCAGCAATGTCAACTGTCATTGACACAGTCTTCTTGCCATATTTGAACTTGCACCTGGCAAAGGGATTTCCTTTGCCAGTTCTTCCTGGTTTTACACTTGAGAATGCTGAAATCATATGCAGAAATTCACAAGTTATGGTTTGCAGTGATGTGGTCCACACAGGAGAATATGATCTCTATAAGCTACTGCCACTATGGGTAAATATGCTGTCCATTTAG 1506 0.405 MGLSSNLMAPAAFFIVLALFSVPTDAQIKSDEGFISVFISSKGLGFVKDLLMHKAVSSLTPIEIQPIEKIVKIPLVGQVDILLSNITILSVGVGTSYVSSGGAGVVIVASGGTANMSMNWKYSYDTWLFPISDKGAASVLVEGMAMELTLGLKDQNGTLSLSLLDWGCFVKDIFVKLDGGATWFYQGLVDAFKEQIASAVEDSVSKRIREGIIKLDSLLQSVPKEIPVDHVAALNVTFVKDPVSSNSSIDFEINGLFTAKDGIPAPTNYHKKHRAPVSCTGPAKMIEMSLDENVFNSATSVYFKADFMSWIVNKMPDQSLLNTAGWKYIVPQLYNQYPDDGVNLNISVSSQPMLKIADDKVDTTIYSDMIIDVLDSGEVIQVACISLVINATGSIQISKNNLTGSFGLTEFTMSLKWSNIGDLDMHQVQAAMSTVIDTVFLPYLNLHLAKGFPLPVLPGFTLENAEIICRNSQVMVCSDVVHTGEYDLYKLLPLWVNMLSI* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0673 501 PIRSF Lipid_binding_protein 9 486 IPR030675 GO:0005615|GO:0008289
Vvi19g0673 501 Gene3D - 37 470 - -
Vvi19g0673 501 SMART bpi2_2 280 478 IPR001124 GO:0008289
Vvi19g0673 501 Pfam LBP / BPI / CETP family, N-terminal domain 43 212 IPR017942 GO:0008289
Vvi19g0673 501 Gene3D - 42 220 - -
Vvi19g0673 501 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 247 480 IPR017943 GO:0008289
Vvi19g0673 501 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 37 245 IPR017943 GO:0008289
Vvi19g0673 501 Pfam LBP / BPI / CETP family, C-terminal domain 282 470 IPR001124 GO:0008289
Vvi19g0673 501 PANTHER OS06G0309200 PROTEIN 9 489 IPR045897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0673 Vvi-Chr19 7342682 7347732 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0673 K05399 - vvi:100264027 960.288