Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0670 ATGGCCAGCGAAAACGAGCCTGCCAAACTCCTTCTACCCTACCTTCAACGCGCCGATGAGTTGCAGAAACACGAACCCCTCGTCGCCTACTACTGTCGATTATATGCGATGGAAAGAGGGCTGAAAATTCCTCAAGGCGAGCGTACCAAGACCACCAACTCCCTCCTCATTTCCCTCATGAAACAGCTAGAAAAGGATAAGAAGGCATTGAAATTGGGGCCTGACGACCACTTGCACTTGGAAGGATTTGCCTCAAATGTTTTTGCAAGAGCAGACAAGCAGGATCGAGCTGGACGAGCAGATTTGAATACTGCAAAAACCTTCTATGCTGCAAGCATTTTCTTTGAGATTCTTAATCAGTTTGGTGAACTTCAGCCTGATCTTGAACAGAAACAGAAGTATGCAGCATGGAAAGCAGCTGATATTAGGAAAGCTTTGAAAGAGGGAAGGAAACCCCAACCAGGCCCTCCTGTTGATGAAAATGATCTATCACTACCAACAAGTACCACAAGTGGTGCATATGATCTTGGGCCTAGCCAAACTGGTCCATCTTTCAATCCAGGACCAGAATCTGATCCATCACCTCAATTTAATGGTAGTCTGAGCCGCCAGCATTCCTTAAATATTACACCATCACCTCCCCCTACAAATATTACACCATCACCCCCCCCTACAAATATTACACCATCGCCTCCTCCTACAAGTTTTCCACCATTGCCTCCAAATGTTCCACCACCTCCCTCTTACCGTAGTGCTGATTATCCTTCCCATGATTTTCATCCACCACCTCCGACTAACAGATCTGAAAATTCTAGTTATCCTCAGCCATACCACCCTCAACCCTACCCACAAGAACCACAGCAGCAATTGCCACAAAATTGTCCTTCTCATGAAACACCCTCATCTTATTCTTATCCTAATTTCCAGTCTTACCCGAGCTTCACTGAGAGCAGCCTTCCAGCCGCCCCATCTCATTATCCTTCTTATTATCAAGGCTCGGATGCTTCATACTCCCCCCAGTCAGCTCCTGTTTCAAGTTATCCATCAGCTGCTCAATACAATTCAAGCGGCGGAAATGAGGCCATTTCAGAGCCTGCACCAAGTTCTTCCCAAACATATCAATATGACAGCAATTACCAGCCACCAGCAGAGAAAATTGCTGAGGCACACAAGGCTGCAAGGTTTGCGGTTGGGGCTTTGGCATTTGATGATGTATCAGTTGCAGTGGACTTCCTTAAAAAATCCCTTGAATTGCTGACAAAACCATCTGCAGGCCAGTAA 1281 0.4629 MASENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQGERTKTTNSLLISLMKQLEKDKKALKLGPDDHLHLEGFASNVFARADKQDRAGRADLNTAKTFYAASIFFEILNQFGELQPDLEQKQKYAAWKAADIRKALKEGRKPQPGPPVDENDLSLPTSTTSGAYDLGPSQTGPSFNPGPESDPSPQFNGSLSRQHSLNITPSPPPTNITPSPPPTNITPSPPPTSFPPLPPNVPPPPSYRSADYPSHDFHPPPPTNRSENSSYPQPYHPQPYPQEPQQQLPQNCPSHETPSSYSYPNFQSYPSFTESSLPAAPSHYPSYYQGSDASYSPQSAPVSSYPSAAQYNSSGGNEAISEPAPSSSQTYQYDSNYQPPAEKIAEAHKAARFAVGALAFDDVSVAVDFLKKSLELLTKPSAGQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0670 426 Pfam Vta1 C-terminal domain 384 420 IPR041212 -
Vvi19g0670 426 Pfam Vta1 like 13 148 IPR039431 -
Vvi19g0670 426 MobiDBLite consensus disorder prediction 213 262 - -
Vvi19g0670 426 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 422 IPR044538 GO:0032511
Vvi19g0670 426 MobiDBLite consensus disorder prediction 289 379 - -
Vvi19g0670 426 Gene3D - 3 152 IPR023175 -
Vvi19g0670 426 PRINTS Proline rich extensin signature 175 191 - -
Vvi19g0670 426 PRINTS Proline rich extensin signature 251 268 - -
Vvi19g0670 426 PRINTS Proline rich extensin signature 211 232 - -
Vvi19g0670 426 PRINTS Proline rich extensin signature 233 249 - -
Vvi19g0670 426 PRINTS Proline rich extensin signature 279 304 - -
Vvi19g0670 426 MobiDBLite consensus disorder prediction 147 381 - -
Vvi19g0670 426 Gene3D Immunoglobulin FC, subunit C 382 421 - -
Vvi19g0670 426 MobiDBLite consensus disorder prediction 162 212 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0670 1 129 Glycosyltransferase AT2G31960 26.087 1.01e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0670 K12199 - vvi:100253708 749.969