Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0667 ATGGAGCTCTACTTCTCCACAACGCTCCTCAAATTCAGACCACCTCTCTCTCTCCTCTCTCCCATCACCTCTCTCTCCCTTACAACCCCTCTTCTCCTTCAACCCAAAAAAAATCCCTCCAATCTTCACACACTCTCTTATTCTCGCCAATTCTTTCATCCCCAACACCCATCTCACAGAAATTCAATCCATTTCACAGCTTTTTCATCTCCTGCTTCCGTAGCTTCCGCAAAAGACCGCTTACCGGCTGATGTTGAGGTCACTGAAACTGAAGAACCCAATTCAAGAGTTAGGTTGAGTGTAGAAGTTCCGGCAGTTGTTTGTGAGGATTGTTACCAAAGGGTCATACGTGAATTTACAAAGCTGGCAAAGATCCCTGGATTTCGCCCTGGGAAGAAAGTTCCAGAGACTGTTCTTATAAATCATATTGGGAAGAAAAATGTTCAAAAGGCTACAATTGAATCTATATTGAAGAGGACCTTTCCACATGCCATGTCTTCGGTGGCTGGGAGGGCTCTGAATGACTCCATCCGCATTGTAACCAAATTTTCTGATATGGAAGAAACCTATTCTTCACAAAAATTTCTGAGATATGATATCATTGTTGATGTGGCACCTGAAGTCAAATGGGTTCCTGAAAATGGATACAAGAACTTGAAGATTGTTGTTGAGATAGACAGTGACATAGATGCTCAGAGAGCTTCTGAACAAGAGTTAAAACGTCGTTACAAGTCTCTCGGTTTGCTGAGAATTATAACTGACAGGGGACTACAGATTGGTGATGTTGTTGTCCTTGATATATCAGCAACAACAATAGACCAAGATGAATCAAATGTTCAGAAAATTCCATCTGCAGAGAGTAAAGGTTTTCACTTTGATACAGAAGATGGTGATAAAGTCCTTCCAGGCTTCCTTGACTCAATAATTGGCATTCGACAAGGTGAAACAAAGTCCTTTCCACTAGTATTTCCTGAATCATGGAGACAAGAAAATCTCCGTGGTGTTCATGCTCAGTTTACTGTTGAATGCAAGGAATTATTTTATAGAGAGTTACCTGAATTAAACGACTCCCTTGCTGAGAAGCTTCTTCCTGGATGCACCACCTTGGAGCAGGTCAAGGAATCATTGTTGCAAAGATGCCTAGAGGTGGAGCAAACAGCTAAAGAACAAGCAACAGATAACGCAATTCTAGACCAGCTTCACAAGATGATTGAAGTAGATATTCCTCAATCCTTGTTTGAGGAACAGGGCAGGCAGCTCTATGGAGCCCAGCTTTTACAGATACAGGCAAATATGAAGCTTAATGAACAGCAGTTGGCATCTCTATCAAGTCCGAAGGCCGTGAATGAATACCTGGAAAGCCAGAAGGAGAATATAACAAGTGTGATCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATGCAGAGATTGAGTACAAAACCAGGTGA 1611 0.419 MELYFSTTLLKFRPPLSLLSPITSLSLTTPLLLQPKKNPSNLHTLSYSRQFFHPQHPSHRNSIHFTAFSSPASVASAKDRLPADVEVTETEEPNSRVRLSVEVPAVVCEDCYQRVIREFTKLAKIPGFRPGKKVPETVLINHIGKKNVQKATIESILKRTFPHAMSSVAGRALNDSIRIVTKFSDMEETYSSQKFLRYDIIVDVAPEVKWVPENGYKNLKIVVEIDSDIDAQRASEQELKRRYKSLGLLRIITDRGLQIGDVVVLDISATTIDQDESNVQKIPSAESKGFHFDTEDGDKVLPGFLDSIIGIRQGETKSFPLVFPESWRQENLRGVHAQFTVECKELFYRELPELNDSLAEKLLPGCTTLEQVKESLLQRCLEVEQTAKEQATDNAILDQLHKMIEVDIPQSLFEEQGRQLYGAQLLQIQANMKLNEQQLASLSSPKAVNEYLESQKENITSVIKQNLAVGDIFRRENLQFPTEELVKEVENSISEFKRHKQEYDEERIREQVQEVLEGAKVLEWLKEHAEIEYKTR* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0667 536 Gene3D - 245 352 IPR046357 GO:0003755
Vvi19g0667 536 Pfam Bacterial trigger factor protein (TF) C-terminus 368 527 IPR008880 GO:0006457|GO:0015031
Vvi19g0667 536 Pfam Bacterial trigger factor protein (TF) 86 225 IPR008881 GO:0006457|GO:0015031
Vvi19g0667 536 SUPERFAMILY FKBP-like 254 355 - -
Vvi19g0667 536 FunFam Chloroplast trigger factor 330 531 - -
Vvi19g0667 536 Coils Coil 486 506 - -
Vvi19g0667 536 NCBIfam trigger factor 96 525 IPR005215 GO:0015031
Vvi19g0667 536 SUPERFAMILY Trigger factor ribosome-binding domain 86 224 IPR036611 GO:0006457|GO:0015031
Vvi19g0667 536 FunFam Trigger factor 251 352 - -
Vvi19g0667 536 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 354 535 IPR027304 -
Vvi19g0667 536 FunFam Trigger factor 85 208 - -
Vvi19g0667 536 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 62 518 IPR005215 GO:0015031
Vvi19g0667 536 Hamap Trigger factor [tig]. 85 536 IPR005215 GO:0015031
Vvi19g0667 536 Gene3D - 83 208 IPR036611 GO:0006457|GO:0015031
Vvi19g0667 536 Gene3D - 215 531 IPR037041 GO:0006457|GO:0015031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0667 K03545 - vvi:100243475 1019.22