Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0661 ATGCTGCCACAGCGTGTGAAGAGAGCCATCACAGAGAATCCGAAGAAGCTAGCAAATTTGATTGACCTTGCAAATCTGCCTTCAACACTTCGAGAATTTGTGGGTCAGTCTCAGATTTCACGTTTGGGCTGTTTCATGCGCGTCTGGTCATACATCAAGGCCAACAATCTTCAGGATCCAAACAACAAGAATGTGGTCATTTGTGATGACAAGCTGAGGAGTATTTTGTTGGGTAAGCCTCGTGTTGAGCTGGCTGAACTTCCTGCACTGATCAAACTGCATTTTCCCAAGGAGCGAAAGTGA 303 0.4587 MLPQRVKRAITENPKKLANLIDLANLPSTLREFVGQSQISRLGCFMRVWSYIKANNLQDPNNKNVVICDDKLRSILLGKPRVELAELPALIKLHFPKERK* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0661 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Vvi19g0661 100 SMART swib_2 20 100 IPR019835 -
Vvi19g0661 100 SUPERFAMILY SWIB/MDM2 domain 13 97 IPR036885 -
Vvi19g0661 100 Gene3D SWIB/MDM2 domain 8 100 IPR036885 -
Vvi19g0661 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 12 98 - -
Vvi19g0661 100 Pfam SWIB/MDM2 domain 25 95 IPR003121 -
Vvi19g0661 100 CDD SWIB-MDM2_like 30 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0661 Vvi-Chr19 7221601 7222581 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vvi19g0661 SWIB 7.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0661 - - vvi:100247022 201.83