Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0659 ATGGAGATCGACTCGGGTCCGATTAGTTCGTGTTCTAAACAGAACCAGATGATCTATCAGGAGTGGTTCAATTTCGCTGATTCAGATTCCGATGGCCGCATTACTGGAAATGACGCCATAAAGTTCTTCGCTATGTCCAATTTGCCTCGCCCGGATCTCAAACAGGTGTGGGCAATTGCAGATACCAAACGACAGGGTTTTCTTGGTTTAAAAGAGTTCATTACTGCCATGCAGCTAGTTTCCCTGGCACAAGCTGGACATGCAATCACACAGGATCTCCTGCACAGTGAAGTTGACTTGGGAAACTTAAATCCCCCTCAAATGGAAGGCTTGGCTGCGTTACTAGCTAAGAAAAAGCGTGCACACAAAACAAGTGATCCTGATATAAATGGTAGTTCTCAACCACAGCCATCACCAACTGCTAGTTGGTTCACTTCAAAATCTTCGAAGAAGGTACCTCTATCTTCCGTTACATCAATAATTGATGGCTTGAAGAGGTTGTACATTCAGAAGCTCAAGCCATTAGAGGTTACATATCGTTTTAACGATTTTGCATCCCCCTTGTTGACAAATAGCGATTTTGATGCCAAACCTATGGTTATGCTTTTGGGTCAATACTCAACTGGAAAAACTACTTTCATTAAACATTTGCTGAAGAGTAGTTATCCAGGAGCACACATTGGACCTGAACCTACTACTGACAGATTCGTTGTCGTTATGTCTGGACCTGATGAAAGAAGTATTCCTGGAAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTCTACTGGAGCACATCACGTTTGTGGATACTCCTGGAGTTCTATCAGGAGAAAAGCAACGAACACAGCGAGCCTACGATTTTACTGGTGTAACATCATGGTTTGCTGCAAAGTGTGACCTCATTCTACTGCTGTTTGATCCTCATAAACTTGATGTTAGTGATGAATTCAAGCGTGTGATTTCATCTCTTCATGGCCATGATGACAAGATACGTGTGGTTCTGAACAAGGCGGACCAAGTGGATACTCAGCAACTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGGCTCTTTCAACGACAAACCTGTAAATGAAGCTGCTGTTGGTCCAATTGGGAAAGAACTTTTTGAAAAAGAGCAGGAAAACCTTCTTTCTGATTTAAAAGATATCCCCAAGAAGGCTTGTGATCGCCGAATCAATGAATTTGTAAAACGGGCCCGAGCTGCCAAGATTCATGCCTACATCATCAGCCATCTAAAGAAGGAGATGCCTACTATGATGGGCAAAGCCAAGACTCAGCAGAGGCTTATCGACAATCTGGAAGATGAATTTGCAAAGGTCCAGAGGGAGTTCCATCTGCCGGCAGGGGATTTCCCGAACGTTGACCATTTCAGGGAGGTACTGAGTGGTTACAGCATAGACAAATTTGAGAGGTTGAAGCCTAAAATGATACAAACCGTAGATGACATGTTGGGTTATGACATCCCGGAGCTCCTGAAGAGTTTCAGAAATCCATACGATTAA 1638 0.4335 MEIDSGPISSCSKQNQMIYQEWFNFADSDSDGRITGNDAIKFFAMSNLPRPDLKQVWAIADTKRQGFLGLKEFITAMQLVSLAQAGHAITQDLLHSEVDLGNLNPPQMEGLAALLAKKKRAHKTSDPDINGSSQPQPSPTASWFTSKSSKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFASPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTIAVQADMPYSGLTTFGTAFLSKFECSQMPHSLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLHGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPVNEAAVGPIGKELFEKEQENLLSDLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPTMMGKAKTQQRLIDNLEDEFAKVQREFHLPAGDFPNVDHFREVLSGYSIDKFERLKPKMIQTVDDMLGYDIPELLKSFRNPYD* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0659 545 Gene3D - 200 428 IPR027417 -
Vvi19g0659 545 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 194 429 IPR030381 GO:0005525
Vvi19g0659 545 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vvi19g0659 545 Pfam Dynamin family 200 359 IPR045063 -
Vvi19g0659 545 SUPERFAMILY EF-hand 10 89 IPR011992 -
Vvi19g0659 545 Pfam Domain of unknown function (DUF5600) 435 536 IPR040990 -
Vvi19g0659 545 CDD EH 19 85 IPR000261 GO:0005515
Vvi19g0659 545 SMART efh_1 18 46 IPR002048 GO:0005509
Vvi19g0659 545 SMART efh_1 52 80 IPR002048 GO:0005509
Vvi19g0659 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 468 IPR027417 -
Vvi19g0659 545 Pfam Cytoskeletal-regulatory complex EF hand 21 80 IPR000261 GO:0005515
Vvi19g0659 545 SMART eh_3 8 103 IPR000261 GO:0005515
Vvi19g0659 545 MobiDBLite consensus disorder prediction 123 146 - -
Vvi19g0659 545 PANTHER EH DOMAIN 15 541 - -
Vvi19g0659 545 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
Vvi19g0659 545 MobiDBLite consensus disorder prediction 127 146 - -
Vvi19g0659 545 Coils Coil 468 488 - -
Vvi19g0659 545 Gene3D - 10 109 - -
Vvi19g0659 545 Pfam N-terminal EH-domain containing protein 163 195 IPR031692 -
Vvi19g0659 545 CDD EHD 199 443 - -
Vvi19g0659 545 Gene3D - 164 536 - -
Vvi19g0659 545 FunFam EH domain-containing protein 1 200 428 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0659 1 545 EF-hand Containing Proteins AT3G20290 85.688 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0659 K12483 - vvi:100241890 1086.63