Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0655 ATGGCAATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAGAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCCCACAACCAGCCCAAGTGGTGGAGCTTCTCAAGGCACAAGGGATCAATAAAGTGAAACTTTTCGACGCCGACTCTACGGTCCTCACTGCTCTCGCTAACTCCGGCGTAAGCGTCGTCGTTGCACTTCCTAATGAACTCCTCTCCTCAGCCGCGGCCACAGATGGATCCTTCTCCGAAAAATGGGTCCAAACTAACATCGCCCAGTATCACCCCAGCACTCAAATCGAAGCCATTGCCGTTGGCAACGAAGTCTTCGTCGACCCCAATAACACAACTCAGTTCTTGGTGCCTGCCATGAACAATGTTTACAAATCACTCGTGAAACACAACCTCTCATCCATCAAAATCTCTTCTCCTGTAGCGCTCAGTGCTCTGAATTCTTCTTACCCACCCTCAGCTGGGGTGTTCAAGCCTGAGTTAATTGAAACGGTGATGAAGCCCATGTTGGAATTTCTCCGCAAGACCTCATCGTATCTCATGGTTAATGCGTACCCGTTCTTCGCTTACTCTGCCAACTCCGACGTTATTTCCCTCGACTACGCTCTCTTCAGGGCCGTGAACGCCAACGTGACCGATCCTGGTAACGGGTTGAGCTACTCCAGCCTCTTCGAAGCCCAACTCGACGCCGTTTATGCAGCCATGTCCAATATCCAATACAACGACGTTCCGGTGGTGGTGACCGAGACTGGCTGGCCTTCCAAGGGCGACGAGAACGAAATCGGAGCCAGCACAGACAACGCCGCCGCCTACAACGGCAATCTCATCAAACGAGTGCTCACCGGCGGTGGCACTCCGTTGCGGCCAAACGAACCACTCAACGTTTACCTGTTTGCGCTGTTCAACGAGAACCAAAAAACAGGTCCCACATCGGAGAGAAACTATGGCTTGTTCTATCCGAACAAAGAGAAGGTTTATAATATTCCATTAACCATGGAGGCTTTGAAGGCTACTGGGTCAACGCCGATTAACGGTAGCAAGGTTCAGGTGACTTCACCTCCAACGGCTTCCGAAGAAGTAACCACTGCAGCGGTGGGGCAAACGTGGTGCGTGGCGAACGGCGAGGCTGGGGCAGAGAAGTTGCAGGCGGGGCTTGACTACGCTTGCGGAGAGGGCGGGGCTGACTGCCGTCCAATTCAGGAAGGCTCCACGTGTTATAATCCTAACACCCTCGAGGCACACGCTTCGTATGCCTTCAACAGCTACTATCAGAAGAACACACGTGGCGCTGGGACGTGTAATTTTGGTGGTGCGGCACACGTGGTCACGCAAACTCCAAGTACGTATACTATCATTCCTCCTAATTTTCTCCACATTTTAAAATCCGAAATTAGTTAA 1440 0.5153 MAILIFAFLFLLSFSSPSEGGGSVAVNYGRIANDLPQPAQVVELLKAQGINKVKLFDADSTVLTALANSGVSVVVALPNELLSSAAATDGSFSEKWVQTNIAQYHPSTQIEAIAVGNEVFVDPNNTTQFLVPAMNNVYKSLVKHNLSSIKISSPVALSALNSSYPPSAGVFKPELIETVMKPMLEFLRKTSSYLMVNAYPFFAYSANSDVISLDYALFRAVNANVTDPGNGLSYSSLFEAQLDAVYAAMSNIQYNDVPVVVTETGWPSKGDENEIGASTDNAAAYNGNLIKRVLTGGGTPLRPNEPLNVYLFALFNENQKTGPTSERNYGLFYPNKEKVYNIPLTMEALKATGSTPINGSKVQVTSPPTASEEVTTAAVGQTWCVANGEAGAEKLQAGLDYACGEGGADCRPIQEGSTCYNPNTLEAHASYAFNSYYQKNTRGAGTCNFGGAAHVVTQTPSTYTIIPPNFLHILKSEIS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0655 479 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 11 455 IPR044965 GO:0004553|GO:0005975
Vvi19g0655 479 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Vvi19g0655 479 Gene3D - 376 466 - -
Vvi19g0655 479 Pfam X8 domain 382 453 IPR012946 -
Vvi19g0655 479 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Vvi19g0655 479 FunFam Glucan endo-1,3-beta-glucosidase 3 23 347 - -
Vvi19g0655 479 FunFam Glucan endo-1,3-beta-glucosidase 4 377 469 - -
Vvi19g0655 479 SMART X8_cls 382 466 IPR012946 -
Vvi19g0655 479 Pfam Glycosyl hydrolases family 17 24 342 IPR000490 GO:0004553|GO:0005975
Vvi19g0655 479 Gene3D Glycosidases 22 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0655 Vvi-Chr19 7150603 7152120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0655 22 461 Glycoside Hydrolase AT5G55180 71.429 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0655 - - vvi:100259000 894.419