Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0653 ATGAAGAAACACGCCCCTCCCCAACATTGCTTTCCTCTGCTCTCAATCTTCTTCGCCATCATCCCCTTCTCTAGTTCTTTCGACTACCACCAAGCTCTCTCCAACTCTCTCCTCTACTTCGAAACGCAGCGTTCCGGTCGCTTACCCCACAACCAGAGAGTCACTTGGCGTGATCACTCCGGCCTCACCGACGGCTTAGAACAAGGCGTAGACTTGGTGGGAGGCTACTACGACGCCGGCGACAATGTTAAGTTTGGTCTACCGATGGCCTTCACAGTCACGATGCTGTCGTGGGGTGTTATAGAGTACGGCCAGTATATGGCCAGCGCCGGCGAGTATGGTCACGCGCTTGAGGCCATCAAATGGGGGACGGATTACTTTATCAAAGCTCATACTCAACCCAATGTCTTGTGGGTACAGGTGGGGGACGGCGACACCGATCACTATTGCTGGCAACGGCCGGAGGACATGACTACATCGCGGCAAGCTTACAAGATCGACGAGACAAACCCGGGTTCGGAGGTGGCCGGAGAGACGGCAGCAGCTATGGCGGCTGCTTCTATTGTGTTCAGAAAAACAAACCCACACTACTCTCAACTCCTACTACACCATGCTCAGCAGTTGTTTGAGTTTGGAGACAAGTACAGAGGAAAATATGACAAAAGCGTAGGAGTGGTGAGTAGCTACTATCCATCGGTGAGTGGGTACCAGGATGAATTGCTGTGGGCCGCTTTGTGGCTATACAGAGCCACCGACAATCAGTCTTACTTAAATTATGTGCTTCAAAATGCCCTCTCTTTTGGTGGGATCACCTGGGCCATTTCTGAATTCAGCTGGGATGTTAAATATGCTGGGCTTCAAATCATTGCTTCCATGCTGCTGAGGGAGGAGAAAAACAAGGTGCACAAGCCCACGCTAGAGCAGTACCTCTCCAAGGCACAGCACTATCTCTGCGCCTGCCTCCACAAGAACAATGGGAGCAACGTGGATCGCACCCCAGGAGGCCTGCTCTACACCCGCCAATGGAACAACATGCAATACGTATCAAATGCTGCATTTTTGCTCACAGTCTACTCCGATCATCTCCGGGAAGCAAATCAACAACTCAACTGCCACGGAGAATTGGTGGGCCCAGAGGAGATCCTCTCCTTCGCTAAATCTCAAGTCGACTACATTTTGGGCGCCAATCCTATGGCCATGAGCTACCTGGTGGGCTATGGCCCAAAGTACCCGACAAAGGTGCACCACAGAGGTTCATCTACCGAATCATACAAGCACGACAAGGGTTTTATCGGGTGCACCCAGGGGTACGATGGCTGGTACGCCCGACCCCATCCTAACCCACATGTACTAGTCGGAGCCCTTGTAGGTGGGCCCGATGTCAACGATCGGTTTAGGGACGACAGGGGAAATTACGTGCAAACCGAGGCTTGCACGTATAATACGGCGCCACTTGTCGGGGTATTCGCTAAGTTATTTGGATTAGAAAGTACTGAATTCTCTTCTAATCCATCTTTAATCTCTTCGTGGTAG 1533 0.5166 MKKHAPPQHCFPLLSIFFAIIPFSSSFDYHQALSNSLLYFETQRSGRLPHNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTVTMLSWGVIEYGQYMASAGEYGHALEAIKWGTDYFIKAHTQPNVLWVQVGDGDTDHYCWQRPEDMTTSRQAYKIDETNPGSEVAGETAAAMAAASIVFRKTNPHYSQLLLHHAQQLFEFGDKYRGKYDKSVGVVSSYYPSVSGYQDELLWAALWLYRATDNQSYLNYVLQNALSFGGITWAISEFSWDVKYAGLQIIASMLLREEKNKVHKPTLEQYLSKAQHYLCACLHKNNGSNVDRTPGGLLYTRQWNNMQYVSNAAFLLTVYSDHLREANQQLNCHGELVGPEEILSFAKSQVDYILGANPMAMSYLVGYGPKYPTKVHHRGSSTESYKHDKGFIGCTQGYDGWYARPHPNPHVLVGALVGGPDVNDRFRDDRGNYVQTEACTYNTAPLVGVFAKLFGLESTEFSSNPSLISSW* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0653 510 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Vvi19g0653 510 Gene3D - 25 495 IPR012341 GO:0005975
Vvi19g0653 510 PANTHER ENDO-1,4-BETA-GLUCANASE 20 493 - -
Vvi19g0653 510 SUPERFAMILY Six-hairpin glycosidases 26 499 IPR008928 GO:0005975
Vvi19g0653 510 Pfam Glycosyl hydrolase family 9 29 488 IPR001701 GO:0004553|GO:0005975
Vvi19g0653 510 FunFam Endoglucanase 25 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0653 Vvi-Chr19 7136387 7138873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0653 13 491 Glycoside Hydrolase AT2G32990 75.720 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0653 - - vvi:100262347 1037.71