Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g0633 | ATGTTTGTTAGCAGACATGGTGGGCAATCAGAAATTGTTTTGAGGGTGAAACAAGGAGACAACCCAACATTTGGATTCTTGATGCCTGACCACCATCTTCATGCGTACTTTAGGTTTCTTGTTGACCACCGAGAACTTCTAGAGTCTGATGTTGATGGCAAAACTGAAGAAGAGAAGAAAGCTGATAATGAGGAAAATCAGACAGGTGGTGTTGGAGGAGGTGGAGCTTTGTCCTTGCTTGGTTCTGTATATGGGTCTGGGGAGGATGAGGAGGGCACAAATATGGATTCCTCTGAATCTCAAGAAAATGATCGTAAGGAAACCTCCACAGCTGCTAATACAGTGGTTTCTCATGGTTCAGAGGGGATGGTTTCTTCTATGAATATAGATGGAAACAATGAAGCAATTCCTAAGCATCTGCCTCCTAAAGAAAAAGCTCCTCTGTCAAAAAGGAACCGTGTTGCCAGTACAGTTAAGGGTGGAGCTGCAAGTAGCTTGAAAAAGAAAGGTGAAGACTTGGGTTCACTTGGTGCTGCCATGGACAAGTCACAGACTTCTGCATTGCCAAGCACCTCCAAGGTTAAAACATTGGTTTTGGAGCCTCCCTCTGATTTAAAGAGATTGGTTGATAAGATAGTTGAGTTCATTCTAAAAAATGGGAAGGAATTTGAGGCAGTGCTTGTTGAACAGGACAATAAACATGGGAGATTTCCATTTCTTCTGCCATCCAACCAGTATTACCCTTATTATCTGCAAGTTCTTCAAAAAGCTCAAGAGTCAAAATTAACTGGCAAGAATCTCAATTCAGAGAAGGATGGGCTGGACAAAAGAACTGCTTCATCCAATGATGCTGCCTCCTTGGGTTCTTCTTATCATGATATGCCATTTGATTCTGACAGGAAAGAAAAGTTTAAGATGGTACTTGGCAAGTCAAGGAAAGATGGACAGGATCATCCTTCCAAACCGACCCAGCAACAGATTGGTGTTAGCTTGGATACAGCTGCAGCCATTCTTCAGGCTGCCACGAGAGGCATTAAGAATCCCAATTTCGACATTCTTCCAAGGACATCATCAAATGGTATCAGTAATGGCCTTAGCAGTGAGGGTGGGCAGGCTTCTAGTTTTCAGAGTCGCTTTTCTTCTCAACCTCATAGTTCCAGCCAAAAGTCAGATCCAAATGAAGGGCCCAGTGTTTCTGTCCCTGTTGCCAAGGCTATTGCAAATACAGCAGCACTTGCTGCTGCAAGTGAGGCTGACTCATCTGAAGCACACTTGACTAAAGAGCAGAAGCTGAAGGCTGAAAGATTGAAACGAGCAAAGATGTTTGCAGCCATCATAAAAGGAGGAGCTGGGCCTTTAAAAACTGAAACAGTCCGTAGCTTATCGGTAGAACCGCCTGAATCTGGGGTTTCTGGTTTAGGTGGGTTGGGTGGTGAAGCTTTAAATCTTGCCAGCAAAGAAAGAGAAGGCAGCTCAGTTCCAGTAGATGTTGATACATCCGGCAAAACTGAGAAGCCAGAAAGAGAACATTCTGACACTGAACATAATGAACGGCGATCAAGGAGGAAGTATCGGTCAAGATCAAAAAAACTTGAAGAAGAAGAAGAAGATGATGATGATGACAATTATGGCGATGATGGAAAAGAAGAGGATGAAAAAGAAGACAGAAGGGATCGCAAGCACTCTAGGAAGAAGCACCGCTCTCATCATTCTTCACATTGCAGTAGAGACAGGCATAAGCATAGAAAAAGGCATTCTTCTTCCAAGGACCGAGAGTCTCGGCATCGGCACAAGCATGAGTATTCTGATGATGAGCATCGGGACCGAAGAAAACGAAGTAAGAAATCTAATTCAGAAAGAGAAGCAGACTTGGAAGAAGGGGAGATCAGTACAAAATCCTCAGATCAATCAAAAGTCAGTGTGGGTGAAGGTGCCAGTAGAGAAGCTTCCGTGGATTTATCAAATTCCCACCAAGATCCTAGGCCCCCATCTCAGCCCTCTGATACCACCCAGGTTTCCGATGATCTTAGAGCCAAAATTCGGGCAATGTTACTGGCAACCTTGTAG | 2067 | 0.4403 | MFVSRHGGQSEIVLRVKQGDNPTFGFLMPDHHLHAYFRFLVDHRELLESDVDGKTEEEKKADNEENQTGGVGGGGALSLLGSVYGSGEDEEGTNMDSSESQENDRKETSTAANTVVSHGSEGMVSSMNIDGNNEAIPKHLPPKEKAPLSKRNRVASTVKGGAASSLKKKGEDLGSLGAAMDKSQTSALPSTSKVKTLVLEPPSDLKRLVDKIVEFILKNGKEFEAVLVEQDNKHGRFPFLLPSNQYYPYYLQVLQKAQESKLTGKNLNSEKDGLDKRTASSNDAASLGSSYHDMPFDSDRKEKFKMVLGKSRKDGQDHPSKPTQQQIGVSLDTAAAILQAATRGIKNPNFDILPRTSSNGISNGLSSEGGQASSFQSRFSSQPHSSSQKSDPNEGPSVSVPVAKAIANTAALAAASEADSSEAHLTKEQKLKAERLKRAKMFAAIIKGGAGPLKTETVRSLSVEPPESGVSGLGGLGGEALNLASKEREGSSVPVDVDTSGKTEKPEREHSDTEHNERRSRRKYRSRSKKLEEEEEDDDDDNYGDDGKEEDEKEDRRDRKHSRKKHRSHHSSHCSRDRHKHRKRHSSSKDRESRHRHKHEYSDDEHRDRRKRSKKSNSEREADLEEGEISTKSSDQSKVSVGEGASREASVDLSNSHQDPRPPSQPSDTTQVSDDLRAKIRAMLLATL* | 689 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 500 | 519 | - | - | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 593 | 632 | - | - | |
| Vvi19g0633 | 688 | SUPERFAMILY | Surp module (SWAP domain) | 181 | 255 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 559 | 592 | - | - | |
| Vvi19g0633 | 688 | Gene3D | Surp module | 192 | 263 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 107 | 132 | - | - | |
| Vvi19g0633 | 688 | Gene3D | Surp module | 1 | 43 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | FunFam | Splicing factor 3A subunit 1 | 192 | 263 | - | - | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 533 | 548 | - | - | |
| Vvi19g0633 | 688 | Coils | Coil | 44 | 64 | - | - | |
| Vvi19g0633 | 688 | SMART | surpneu2 | 2 | 46 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | SMART | surpneu2 | 206 | 259 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 361 | 395 | - | - | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 309 | 328 | - | - | |
| Vvi19g0633 | 688 | ProSiteProfiles | SURP motif repeat profile. | 1 | 37 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 633 | 673 | - | - | |
| Vvi19g0633 | 688 | ProSiteProfiles | SURP motif repeat profile. | 208 | 250 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | PANTHER | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT | 2 | 636 | IPR040397 | - | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 265 | 297 | - | - | |
| Vvi19g0633 | 688 | SUPERFAMILY | Surp module (SWAP domain) | 1 | 42 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 52 | 169 | - | - | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 461 | 676 | - | - | |
| Vvi19g0633 | 688 | MobiDBLite | consensus disorder prediction | 361 | 399 | - | - | |
| Vvi19g0633 | 688 | Pfam | Surp module | 1 | 42 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi19g0633 | 688 | Pfam | Surp module | 207 | 255 | IPR000061 | GO:0003723|GO:0006396 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi19g0633 | - | - | vvi:100250252 | 912.909 |