Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0618 ATGGCATGCATTCTGCACGGTCATCGGGTTGGAATTTCTTATTATGATTCCAGTATTCGCCAACTGCATGTCCTGGAAGTTTGGGAAGATGGCAGTTCAGATTTTCCTTTGATTGATTTGGTAAAGTATCAAGCAAAGCCCCTAATCATTTACACGAGCACTAAATGTGAGGACTCCTTCTTGTCTGCATTACAACGAAGTGATGGAACAACTGAGGCCCCTACAGTGAAGCTTATGAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCACAGACTGATTTACCTTAGAGTAACTGGGATGGACGATGGATTAAACATCAAGGAGAGAATTTGTTTTCTGAGTTCTATGATGGATATTGGAAGTGACATTCAAGTTCGTGCAAGTGGGGGCCTTCTTGCCATATTGGAGAATGAGAGGATTGTTGATACCCTTGAGCAAAAGGAATGTGGGAATGCATCAATTACAATTGATTTTGTCACAGAAATTTCATTACACAAATTTCTCAAACTTGATGCAGCAGCTCACGAGGCCTTGCAGATTTTCCAAATAGACAAACACCCAAGCCATATGGGCATTGGTAGAGCAAAAGAAGGGTTCTCTGTGTTTGGAATGATGAATAAGTGTGTAACACCAATGGGTAGACGTCTATTAAGAAACTGGTTCTTGCGGCCTATACTAGACCTTGAAAACTTGAACAGTCGTCTAAATGCTATATCATTCTTCCTTTGTTCTGAAGAATTGACAGTTTCTTTACGAGAAACACTGAAGTCTGTAAAGGATATTCCCTATATATTGAAGAAATTCAACTCCCCAAGCTCCATATGCACAAGCACTGACTGGGCATCCTTTTTGAAGAGTGTTTGTTCACTCTTGCATGTGAACAAGATATTTGAAGTAGGCATTTCAGAAAGTCTTCAAGAGCAAGTGAAGTATTTGAATTTGGACATTGTTGAAAAGGCTCATTCATGCATTACAACAGAGTTGGCTTATGTCTATGAATTGGTAATTGGTGTTATTGATGTGAACAGAAGTAAAGAGAAGGGTTATGGAACACTAGTGAAAGAGGGTTTTTGTGATGAGTTGGATGAGCTAAGGCAAATATATGAAGAATTGCCAGAATTTCTGGAAGAGGTGTCATCATTAGAACTTGCACGACTTCCTCATTTTTGCGGAGGCAAGCTTGTTCCCTGTATTGTTTATATACACCAAATAGGATACTTGATGTGCATTTTTGAAGACAAACTTGATGAAACTACACTAGAAAAACTTCAAGATTTTGAATTTGCATTCTCAGATGGGGATGGAGATACAAAAAAATTCTTCTACCGCACCTCAAAGACGCGAGAATTGGACAACCTACTTGGAGATATATATCATAAAATTCTAGACATGGAGAGGGCAATTACTAGAGACTTGGTGTCACATATACTCCTATTCTCAATGCATTTGCTCAAGGCAGTGAGCTTTGCTGCTGAACTTGATTGCTTTTTGTCATTATCATTGATTGCTCATCAGAACAACTATGTGAGGCCTGTTTTGAGTGCAGATTCATTACTTGATATACGAAATGGAAGACATGTTTTGCAGGAAATGACAGTAGACACATTCATTCCCAATGATACAAAGATTCTTGATGATGGAAGAATTAATATCATCACTGGTCCCAATTATTCAGGGAAGAGCGTCTACATAAAGCAGGTGGCTTTAATTGTTTTCCTTTCCCATATTGGAAGTTTTGTACCAGCAGATGCTGCAACTGTGGGTTTGACAGATAGGATATTTTGTGCAATGGGAAGCAAGCCTATGACTGCAGAACAATCAACATTTATGATTGATCTGCATCAAGTGGGAATGATGTTAAGGCACGCAAACTCTCGATCTTTATGTTTGCTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGTATTGGTCTCCTTGGGGGAACTATTAATCATTTTGTTGCAAGTGATGACCCTCCAAAGGTTCTGGTTTGCACTCACTTGACTGAGATGTTCAATGAGAGTTGCTTACCAAAGTCTGAGAAAATCAGGTTTTACACCATGAGTGTGCTGAGACCTGACAACAACTGTACAGATATTGAAGATATCGTATTCCTTTATCGGCTAGTTCCTGGACATGCACTTCTTAGCTATGGGCTGCACTGTGCACTACTTGCTGGTGTTCCAGAGGATGTTATTAAGAGAGCAGCATGTATATTGGATGCTATTGGAAATAATAAGCATGTTGAGCGTCTGTGCAACGAGAGAATATCGGCTCAGGATCAGCTGTACAAGGATGCAGTGGACAAGATGTTGGCATTTGACATTCTCAAGGGCGATCTCAACCTCTTTTTCCAAGACATCTTTCCTTCTTAA 2382 0.3963 MACILHGHRVGISYYDSSIRQLHVLEVWEDGSSDFPLIDLVKYQAKPLIIYTSTKCEDSFLSALQRSDGTTEAPTVKLMKSSIFSYEQAWHRLIYLRVTGMDDGLNIKERICFLSSMMDIGSDIQVRASGGLLAILENERIVDTLEQKECGNASITIDFVTEISLHKFLKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELTVSLRETLKSVKDIPYILKKFNSPSSICTSTDWASFLKSVCSLLHVNKIFEVGISESLQEQVKYLNLDIVEKAHSCITTELAYVYELVIGVIDVNRSKEKGYGTLVKEGFCDELDELRQIYEELPEFLEEVSSLELARLPHFCGGKLVPCIVYIHQIGYLMCIFEDKLDETTLEKLQDFEFAFSDGDGDTKKFFYRTSKTRELDNLLGDIYHKILDMERAITRDLVSHILLFSMHLLKAVSFAAELDCFLSLSLIAHQNNYVRPVLSADSLLDIRNGRHVLQEMTVDTFIPNDTKILDDGRINIITGPNYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKPMTAEQSTFMIDLHQVGMMLRHANSRSLCLLDEFGKGTLTEDGIGLLGGTINHFVASDDPPKVLVCTHLTEMFNESCLPKSEKIRFYTMSVLRPDNNCTDIEDIVFLYRLVPGHALLSYGLHCALLAGVPEDVIKRAACILDAIGNNKHVERLCNERISAQDQLYKDAVDKMLAFDILKGDLNLFFQDIFPS* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0618 793 Gene3D - 509 778 IPR027417 -
Vvi19g0618 793 SMART mutATP5 548 743 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi19g0618 793 Pfam MutS domain III 176 501 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi19g0618 793 SMART DNAend 197 533 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi19g0618 793 CDD ABC_MSH5_euk 521 730 - -
Vvi19g0618 793 FunFam DNA mismatch repair protein MSH5 510 776 - -
Vvi19g0618 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 744 IPR027417 -
Vvi19g0618 793 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 50 757 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi19g0618 793 FunFam DNA mismatch repair protein MSH5 169 395 - -
Vvi19g0618 793 Pfam MutS domain V 552 743 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi19g0618 793 ProSitePatterns DNA mismatch repair proteins mutS family signature. 628 644 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi19g0618 793 PIRSF MSH2 5 776 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vvi19g0618 793 Gene3D - 169 389 - -
Vvi19g0618 793 SUPERFAMILY DNA repair protein MutS, domain III 172 508 IPR036187 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0618 K08741 - vvi:100252044 1583.16