Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0617 ATGGATCACGGTCTGGGTCTTCTTCTCAGTTGTTTCTTCATCGTCTTCTCATCTTTGTTCATATTTTCAGAAGCTCAGTTGGCTCCAGCTCTCTTCATGTTTGGAGACTCACTGGTGGATGTGGGCAACAACAATCATCTCAAGCTCTCCCTCGCCAAAGCTGATTTCCCCCACAACGGCGTCGACTTTCCCGGGAAAAAGCCCACCGGAAGGTTCTGTAACGGCAAGAACGCTGCTGATTTTCTTGCTGAGAAATTGGGCTTACCATCCGCACCGCCTTATCTTTCACTGATATCCAAATCCAACCTCAGCAATGCATCTTTCGTCGCTGGTGTCAGCTTCGCCTCCGGAGGTGCCGGAATCTTTGATGGCACGGATGCACTTTATAAACAATCATTACCACTAAAAAAGCAAGTGGCCTACTACGCGACCGTATATGAACGCTTGGTGCAACAGCTAGGATCGGCTGGTGCGCAGGAGCATTTATCAAAATCGGTCTTCGCCGTTGTGATAGGAAGCAACGACATCCTTGGCTACTACGGTTCAGACTCAAGCACCCGCAACAAGACTGCCCCACAACAGTTTGTGGATTCAATGGCTGCCACCCTCAAAGAACAATTGAAGGGAATGTACAACCTTGGTGCCCGCAAATTTGCAATGGTCGGGGTGGGTGCGGTGGGATGCTGTCCCTCACAGAGGAATAAGAAGAGCACAGAAGAATGCAGTGAAGAAGCGAACTACTGGTCCGTTAAGTACAATGAACGCCTCAAGTCACTGTTACAGGAATTGATATCTGAGCTCAAGGGCATGAGCTACTCCTACTTTGACACTTACAGTGTTATGCTCAACCTCATTCAGAAACCAGCTGCTTACGGATTTAAAGAGGTTAAAGCTGCTTGTTGTGGGTTGGGGAACCTAAACGCAGATTTCCCATGCCTGCCGATTTCAACATATTGCTCCAACAGAAAAGATCATGTCTTCTGGGATCTATACCACCCAACAGAAGCAGCAGCTAGCATCGTGGTCCAGAATATTTTTAATGGCACACAAGAGTACACATTTCCCATGAACCTGAGGCAACTGGTTGCCGCCTAA 1095 0.4813 MDHGLGLLLSCFFIVFSSLFIFSEAQLAPALFMFGDSLVDVGNNNHLKLSLAKADFPHNGVDFPGKKPTGRFCNGKNAADFLAEKLGLPSAPPYLSLISKSNLSNASFVAGVSFASGGAGIFDGTDALYKQSLPLKKQVAYYATVYERLVQQLGSAGAQEHLSKSVFAVVIGSNDILGYYGSDSSTRNKTAPQQFVDSMAATLKEQLKGMYNLGARKFAMVGVGAVGCCPSQRNKKSTEECSEEANYWSVKYNERLKSLLQELISELKGMSYSYFDTYSVMLNLIQKPAAYGFKEVKAACCGLGNLNADFPCLPISTYCSNRKDHVFWDLYHPTEAAASIVVQNIFNGTQEYTFPMNLRQLVAA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0617 364 SUPERFAMILY SGNH hydrolase 32 346 - -
Vvi19g0617 364 CDD SGNH_plant_lipase_like 29 348 IPR035669 -
Vvi19g0617 364 Pfam GDSL-like Lipase/Acylhydrolase 31 344 IPR001087 GO:0016788
Vvi19g0617 364 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 29 361 - -
Vvi19g0617 364 Gene3D SGNH hydrolase 21 351 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0617 Vvi-Chr19 6729336 6731826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0617 27 362 Acyl Lipid Metabolism Gene Families AT4G10950 34.118 7.40e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0617 - - vvi:100255502 709.138