Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0613 ATGGACTCTGTTCTAGGTACGCCAGCAGAGGTTTCATCTGGGATTCCATTGCCTGATAAGAAGTCACTGGAGTTGATTCTTGACAAACTTCAGAAGAAAGATATATATGGTGTTTATGCAGAACCAGTGGATCCTGAAGAGCTGCCTGATTATCATGATGTGATTGAGCATCCAATGGACTTCGCGACAGTGAGGAAGAAACTTGGGAATGGGTCATATCGTACCTTTGAGGAATTTGAGAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGGCACGCGCCATTCAAGAGCTGGCAAGAAAGAAATTCCAGAAGTTAAGAATTGACATTGGACGCTCTGAGAAAGAGCTCAAGTCAGAACGCTCCGAGAAAGAGCTCAAGTCAGAACGCTCTGAGAAAGAGCTCAAGCCGGAGCGCTTTGAGAAAGAGCTCAAGTCCGAACGCTCTGAGAAAGAGCTCAAGCCAGAACGATCTGAGAAAGATCTCAAATCAGAACAGAAAATGAGATCCAACCCCTTGGTGAAGAAGCAAATAAAGAAGCCGATTTTCCGGACTGCACAGGAACCTGTTGGCTCCGATTTCTCGTCAGGTGCCACTCTTGCCACAATGGGAGATGTCCAGAATGGTTTTAATGCAACCCAAGCTGGTGGTTGTGAAAGGCCAAGCAATGTTGATGGCCTTATAATAGAGAGTAATCCTTCCCAGATTGATAATAATCTAGAGAAGGCAGAAGAACTATTCTCAGGAAAGGGTCTCCTTTCTAAATTCGGGAGGAAGCCATTTGTGGTTGATGAGAACCGTCGTGCAACATATAGCATATCCAATCAACCAATTGTTGGATCTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTGTTGGGCTTCATGCAGATCATTCTTATGCTAGGAGCCTAGCTCGTTTTGCTGCTACTCTTGGACCTGTTGCTTGGAAAGTTGCCTCCCAGAGGATTGAGCAGGCACTTCCTGTGGGGTCCAAATTTGGTCGTGGGTGGGTTGGAGAATTTGAGCCACTTCCGACCCCAGTTTTAATGCTTGAAACTCGCATACAAAAGGAACCTTTTTTGGTTCCAAAGTTGCAGCATAATGCTGTTTTGCGGAAGGATGAAAAAATTTCTAAACCCCCAGTTCCTGCCAAGGAGCATTCTGTTAGTGGGCCTACTTTAGAAGGGAAGCAATCTTTATTTTGTCCTGCTAGTGCACCTACTACAGAAAGGAAACAACCTTTGTTTGGTTCTGCTGGAACAAAATCCACTCCCCCTGTCAATACCGGTAATCAGCAGCAAAACCCACTATCCAGGAATTTTACCCAGCCTGAGAAAAAGGTTTTAAAGCAAGTTGAATTGAATTGCCCACCCTCAGCCAGTCAAAACCATGCAGATCTTGTTTCAGAAAAGCAGCTCCTGAATGGTTCAGAGGCTGCAACTCCCAGATCGATGGAGGCTGTGTCAAGAAGCAGGAATATTTTGCAGTCGCTACCCTTTAAGCTGCCAGATACTAATGGGGTTGTTGCAGGAGGATTGACCAATGGAAAACCCTCAAGTAGAATAGATGGTAATAAAATGATTGGTTCTGCCTCTGATACTGTTCCGAGTCAACTGGCTAGAGTGCCTACTTACCTTCCCCATGGAGCAGAGCAGGGTCTCAGTGACCCAGTTCAGTTGATGAGGAAATTAGCTGAAAAGGCTCAAAAGCAGCAAAAATCTTCAAATCATTCCCCAGTTGATAGTCCACCTGCTATGCCATCAATCCCATCCCCAAGAAGTGATTCAAGCAATGCTGCAGCTACTGCAGCACGGGCATGGATGTCCATAGGGGCTGGAGGGTTTAAACCAGTTGCAGAAAATTCAATTACACCCAAAAATCATATTTCTGCAGATTCCCTATACAATCCAACGAGGGAGCTCCACCCACAAGTTACACGATTTCGAGGTGAATTTCCTGTTTCTGGTGGGATGCATTTTCAGTCCGAGAAGAACAGTTTTCCACTTCAGGCCTTTGTTCCACAGCCTGTTCGAATAGGTGAAGCACAGTTCCAAAACAGACCAGTGATTTTCCCTCAATTAGTGACGGCTGACTTGTCTAGATTTCAGATGCAGTCGCCTTGGCAAGGTCTTAATCCAAATACCCAGCCAAGGCATAGACAGGAAACACTTCCTCCAGACTTGAATATTGGTTTCCAACCATCAGGGTCTCCAGTGAGACAGTCTTCAGGCGTTCTGGTTGATTCTCAGCAGCCTGACCTGGCTTTGCAACTCTAA 2331 0.4535 MDSVLGTPAEVSSGIPLPDKKSLELILDKLQKKDIYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLGNGSYRTFEEFESDVFLICTNAMQYNAPDTIYHKQARAIQELARKKFQKLRIDIGRSEKELKSERSEKELKSERSEKELKPERFEKELKSERSEKELKPERSEKDLKSEQKMRSNPLVKKQIKKPIFRTAQEPVGSDFSSGATLATMGDVQNGFNATQAGGCERPSNVDGLIIESNPSQIDNNLEKAEELFSGKGLLSKFGRKPFVVDENRRATYSISNQPIVGSETIFNTFEAEAKQLVAVGLHADHSYARSLARFAATLGPVAWKVASQRIEQALPVGSKFGRGWVGEFEPLPTPVLMLETRIQKEPFLVPKLQHNAVLRKDEKISKPPVPAKEHSVSGPTLEGKQSLFCPASAPTTERKQPLFGSAGTKSTPPVNTGNQQQNPLSRNFTQPEKKVLKQVELNCPPSASQNHADLVSEKQLLNGSEAATPRSMEAVSRSRNILQSLPFKLPDTNGVVAGGLTNGKPSSRIDGNKMIGSASDTVPSQLARVPTYLPHGAEQGLSDPVQLMRKLAEKAQKQQKSSNHSPVDSPPAMPSIPSPRSDSSNAAATAARAWMSIGAGGFKPVAENSITPKNHISADSLYNPTRELHPQVTRFRGEFPVSGGMHFQSEKNSFPLQAFVPQPVRIGEAQFQNRPVIFPQLVTADLSRFQMQSPWQGLNPNTQPRHRQETLPPDLNIGFQPSGSPVRQSSGVLVDSQQPDLALQL* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0613 776 Coils Coil 124 146 - -
Vvi19g0613 776 MobiDBLite consensus disorder prediction 129 184 - -
Vvi19g0613 776 SUPERFAMILY Bromodomain 10 118 IPR036427 GO:0005515
Vvi19g0613 776 Pfam Bromodomain 25 105 IPR001487 GO:0005515
Vvi19g0613 776 MobiDBLite consensus disorder prediction 724 776 - -
Vvi19g0613 776 SMART bromo_6 12 120 IPR001487 GO:0005515
Vvi19g0613 776 ProSiteProfiles Bromodomain profile. 31 101 IPR001487 GO:0005515
Vvi19g0613 776 Gene3D - 19 146 IPR036427 GO:0005515
Vvi19g0613 776 MobiDBLite consensus disorder prediction 420 456 - -
Vvi19g0613 776 MobiDBLite consensus disorder prediction 391 456 - -
Vvi19g0613 776 ProSitePatterns Bromodomain signature. 37 93 IPR018359 -
Vvi19g0613 776 PRINTS Bromodomain signature 48 64 IPR001487 GO:0005515
Vvi19g0613 776 PRINTS Bromodomain signature 82 101 IPR001487 GO:0005515
Vvi19g0613 776 PRINTS Bromodomain signature 64 82 IPR001487 GO:0005515
Vvi19g0613 776 CDD Bromodomain 19 115 - -
Vvi19g0613 776 MobiDBLite consensus disorder prediction 582 618 - -
Vvi19g0613 776 PANTHER BROMODOMAIN CONTAINING PROTEIN 486 775 - -
Vvi19g0613 776 MobiDBLite consensus disorder prediction 129 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0613 Vvi-Chr19 6698366 6705736 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0613 K22184 - vvi:100267501 1473.76