Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0610 ATGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCCTCGAAAGGAGGCAAGCAGAAGCTGCTCGCATCAGGGAGAAGTATCCTGATAGAATACCAGTTATTGTGGAGAAGGCTGAAAGAAGTGACATACCTGACATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGGCAGTTTGTTTATGTGATCCGGAAGAGGATCAAGCTTAGTGCTGAGAAGGCTATTTTCATTTTTGTCAAGAATGTTCTACCACCCACTGCTGCCATGATGTCTGCCATCTATGAGGAAAACAAAGATGAGGATGGTTTCCTGTATATGACTTACAGTGGGGAAAACACATTTGGATCATTCTAA 378 0.4392 MTFRNSMARSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVKNVLPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGSF* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0610 125 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 9 123 IPR004241 -
Vvi19g0610 125 CDD Ubl_ATG8 18 120 - -
Vvi19g0610 125 Gene3D - 1 123 - -
Vvi19g0610 125 Pfam Autophagy protein Atg8 ubiquitin like 20 123 IPR004241 -
Vvi19g0610 125 FunFam Autophagy-related protein 7 123 - -
Vvi19g0610 125 SUPERFAMILY Ubiquitin-like 10 123 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0610 Vvi-Chr19 6681723 6684791 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0610 K08341 - vvi:100246909 229.95