Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0598 ATGTATATGGCCACTTCTCCATATTCTTCACTCGCGCTCCTCAGAGCCTCTAGGGTTCGCTTCGCGCCTTCTATCTCTAGAGTTTCGCTGTCTTCTTCTTCTTCTTCTTCTTCTCCTCATCCTCCTTGTCCCTCTAGAATCCCCGCTTCTGCTTCTTCTTCGTCTTTGCCTTTTTCCACGATCAGTGGTGGTTACCGTTCCTTGGGATTCTTGTCGGCGTTTCGATCTCGTCGTTGGAGCCACGGCGTCGACTGGCGGTCCCCGGTCAGCCTCCGCGCTCAGATCAGGGCCGCTGCTCCTGTGATCGAGCGGTTCGAGCGGAAAATGGCTACTATAGCTTCTGAGCATCCTTTTAAGGGAATATTGACCAGTGTTCCCAAGCCTGGAGGTGGAGAGTTTGGAAAGTTCTACAGCCTCCCTGCTCTGAATGATCCAAGGATTGACAAGCTGCCTTACTCTATAAGGATACTTCTGGAATCTGCCATACGTAATTGTGACAACTTCCAAGTAACCAAGGATGATGTTGAAAAGATTATTGATTGGGAGAATACTTCACCGAAGCAAGTTGAAATTCCCTTCAAGCCTGCTCGTGTTCTCTTACAGGACTTTACTGGAGTGCCAGCTGTGGTTGACCTTGCCTGCATGCGGGATGCCATGAACAACCTTGGCAGTGATTCAAACAAGATCAATCCCTTGGTGCCAGTGGACCTTGTCATTGATCATTCAGTTCAGGTTGATGTAACAAGATCAGAAAATGCAGTACAGGCAAATATGGACCTTGAATTCCAGAGGAACAAAGAGAGGTTTTCCTTCTTGAAATGGGGTTCAACCGCCTTCCGTAACATGCTTGTTGTTCCTCCTGGTTCTGGTATTGTCCACCAGGTTAATCTGGAATACCTTGGACGGGTTGTTTTTAACAATGATGGTATTCTCTATCCTGATAGTGTGGTTGGTACTGATTCCCACACAACTATGATTGATGGACTAGGAGTTGCTGGATGGGGTGTTGGAGGAATTGAAGCAGAGGCTGCAATGCTTGGCCAGCCAATGAGCATGGTATTACCTGGTGTTGTTGGATTTAAGCTGTCTGGTAAGTTGTGTAGTGGTGTCACAGCAACTGACTTGGTTTTGACCGTGACACAAATGTTAAGGAAGCATGGTGTTGTTGGCAAGTTCGTTGAGTTCTATGGTGAGGGCATGGGTGAATTGTCATTGGCTGATAGGGCCACCATTGCAAACATGTCTCCTGAATATGGAGCAACAATGGGTTTCTTCCCTGTAGATCATGTTACATTACAGTATCTTAAATTAACTGGAAGAAGCGATGAAACGGTAGCTATGATAGAAGCATATTTGCGTGCAAACAGAATGTTTGTTGATTACAATGAGCCTCAAGTAGAACGATTTTACTCATCTTATCTGCAATTGAACCTAGAAGATGTTGAACCCTGCATGTCAGGACCTAAGCGGCCTCATGATCGAGTTCCTTTGAAAGAGATGAAGACTGACTGGAAAGCATGTCTTGATAACAAAGTTGGATTCAAGGGCTTTGCTGTACCGAAAGAGGCACAGGACAAAGTGGCCAAGTTTTCATTCCATGGACAGCCTGCTGAGCTCAAGCATGGTAGTGTTGTTATAGCAGCTATCACGAGTTGTACAAACACATCAAATCCTAGTGTCATGCTTGGGGCTGGTCTTGTTGCAAAAAAGGCCAGTGAACTTGGCTTGGAGGTCAAGCCATGGATTAAAACTAGTCTTGCTCCAGGTTCTGGAGTTGTTACAAAATATCTGCTCCAGAGTGGCCTGCAGAAGTACTTGAATCAGCAGGGATTTCATATTGTTGGCTATGGATGCACAACATGTATTGGGAATTCAGGGGATCTTGACGAATCAGTAGCTTCTGCAATTTCAGAAAATGATATTATTGCAGCTGCCGTGCTCTCTGGTAACCGGAACTTTGAAGGTCGTGTTCATGCATTGACAAGAGCCAACTATCTAGCATCACCTCCACTAGTTGTTGCTTATGCACTTGCCGGCACAGTTGACATCGACTTTGAGAAGGAGCCAATTGGTACAGGAAAGGATGGTAAAGATGTGTACTTCAAGGACATATGGCCTACTAGTGAAGAAATTGCAGAGGTTGTTCAATCAAGTGTGTTGCCTGAAATGTTCAAGAGTACCTATGAGGCTATCACAAAGGGAAATCCCATATGGAATCAGTTATCAGTTCACAGTTCCTCTCTTTATTCATGGGATCCGAACTCAACCTACATTCATGAGCCCCCATATTTCAAGAACATGACCATGAATCCACCGGGTCCTCATGGGGTGAAGGATGCCTACTGCTTGCTCAACTTTGGCGACAGTATTACCACTGACCATATTTCTCCTGCAGGTAGCATCCATAAGGATAGCCCTGCTGCAAAGTATCTTATTGAGCGTGGGGTGGCTCCCAAGGACTTCAATTCTTACGGTAGCCGTCGTGGAAATGATGAGGTGATGGCAAGGGGCACCTTTGCCAATATTCGCATTGTCAACAAGCTTCTGAATGGAGAAGTGGGTCCAAAGACAATTCACATTCCAACAGGAGAGAAGCTTTATGTGTTTGATGCAGCAATGAGATACAAGGCTGATGGGCATGACACCATTGTCCTAGCTGGAGCAGAGTATGGAAGTGGCAGCTCTCGAGATTGGGCTGCCAAGGGCCCAATGCTACAGGGAGTCAAAGCAGTGATCGCTAAGAGCTTTGAGAGGATCCATCGCAGTAACCTGGTTGGGATGGGAATCATTCCTCTTTGTTTCAAGGCCGGTGAGGATGCTGACACACTAGGCTTGACAGGTCATGAACGCTACAACATCGACCTTCCTAGTAAGATCAGTGAGATAAGGCCAGGCCAAGATGTCACCGTTACAACTGACAATGGCAAGTCTTTCACATGCACGGTCCGCTTTGACACAGAGGTTGAGTTGGAATATTTTAATCATGGTGGCATTCTTCCTTATGCCATCCGGAACCTGATCAACCAATGA 3030 0.4617 MYMATSPYSSLALLRASRVRFAPSISRVSLSSSSSSSSPHPPCPSRIPASASSSSLPFSTISGGYRSLGFLSAFRSRRWSHGVDWRSPVSLRAQIRAAAPVIERFERKMATIASEHPFKGILTSVPKPGGGEFGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVQANMDLEFQRNKERFSFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLCSGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANRMFVDYNEPQVERFYSSYLQLNLEDVEPCMSGPKRPHDRVPLKEMKTDWKACLDNKVGFKGFAVPKEAQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKASELGLEVKPWIKTSLAPGSGVVTKYLLQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVASAISENDIIAAAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVYFKDIWPTSEEIAEVVQSSVLPEMFKSTYEAITKGNPIWNQLSVHSSSLYSWDPNSTYIHEPPYFKNMTMNPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLIERGVAPKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTIHIPTGEKLYVFDAAMRYKADGHDTIVLAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLGLTGHERYNIDLPSKISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELEYFNHGGILPYAIRNLINQ* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0598 1009 Gene3D Aconitase, domain 3 484 707 IPR015931 -
Vvi19g0598 1009 CDD AcnA_IRP 197 681 - -
Vvi19g0598 1009 PRINTS Aconitase family signature 311 324 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 610 623 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 387 400 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 282 290 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 401 414 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 325 340 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 258 271 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 483 497 IPR001030 -
Vvi19g0598 1009 PRINTS Aconitase family signature 548 559 IPR001030 -
Vvi19g0598 1009 Gene3D Aconitase, domain 4 772 1008 IPR015928 -
Vvi19g0598 1009 CDD AcnA_IRP_Swivel 785 955 IPR044137 -
Vvi19g0598 1009 SUPERFAMILY LeuD/IlvD-like 748 1006 - -
Vvi19g0598 1009 ProSitePatterns Aconitase family signature 1. 544 560 IPR018136 -
Vvi19g0598 1009 Pfam Aconitase C-terminal domain 808 936 IPR000573 -
Vvi19g0598 1009 FunFam cytoplasmic aconitate hydratase 484 707 - -
Vvi19g0598 1009 Gene3D - 708 769 - -
Vvi19g0598 1009 FunFam Aconitate hydratase 771 1008 - -
Vvi19g0598 1009 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 111 1006 IPR006249 -
Vvi19g0598 1009 Pfam Aconitase family (aconitate hydratase) 176 679 IPR001030 -
Vvi19g0598 1009 ProSitePatterns Aconitase family signature 2. 610 623 IPR018136 -
Vvi19g0598 1009 SUPERFAMILY Aconitase iron-sulfur domain 130 743 IPR036008 -
Vvi19g0598 1009 FunFam Aconitate hydratase 116 483 - -
Vvi19g0598 1009 Gene3D Aconitase, domain 3 115 483 IPR015931 -
Vvi19g0598 1009 MobiDBLite consensus disorder prediction 30 55 - -
Vvi19g0598 1009 NCBIfam aconitate hydratase AcnA 134 1007 IPR006249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0598 Vvi-Chr19 6602089 6614181 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0598 K01681 - vvi:100253811 1958.73