Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0582 ATGGGTGCCAGAGCCAGAGAGTTCTCCGACGATGGCGTTTCGCCATCTCTGAGCCAAGCGTTAGTGTTCGCCACCATGTGCATTATTGGCCTCCCCGTCGAGGTTCACGTCAAGGACGGCTCGGTGTACTCAGGAATCCTCCACACGGCTTGTCTCGGGAAGGACTACGGAATAATTTTGAAGAAAGCAAGGATGATCAAGAAGGGGAAACTTGAGGCAAATGTGGCACATGGTGGCATGGTAGAAACTCTTGTAATCCTGACAGGAGATCTTGTTCAAGTTGTTGCCAAGGGAGTCCAGCTTTCGGATGATGATATTGTTAGAAACATAACTGGCGAGGATACAGAAGCTGTTGCAGGCACCATTCCTTCTTTTGAATGTCTAGGGACTGAGGCAAAAATGTTGAAACCTGGTAATGCTGCTGTGCATAAGAAGCAAATTAACAACACAAGGAATTCAGTCCAAAATGAAAATGGGTTTGCTCATGGTTTTATGGCAACACCCTCTGAGGATAACTTGATGAGCAAAATTGTGGAGCATGAAGTGAGAAGGAAGGAACCAAGTTATTTGGGTAGTGCCTTGGAAATTGAAAATGGAAAAAGAGATTCCAAAATTTTAGCTAAGAGTGAAGAAGCTCCCAGCTTCCCAGACAATGGGAGACAGGTTGGAGATGATAGGATTCAAGGAAAGCAGGATCATTCCAAACAAAAATATGAGTTTCATCGCAAAGAAACTGCTCATGAAATTCAAGGCTCAAGTTCAAGCTCGGATGCTTGCATCACCCATATGAAACCTGTTGAGGCAATAGATGGCAAGATGGCATCTGAGCTTTTACCAAATGGAGTATCACATGATGGTCCTGCTCCTTCATGTGTCAAACCCAACAAAAGTTGTTCTGAGAGGGCCAGTGCAGCAGTCATGGATGATATTTCTACAGGTGTTTCAACTTCTTCCAATTCGGTTGTGGGTGTTACCTCTGTATCATGTCCTACTTCCTTGGCAACTCCAACTGAGATGGTCCTCCCTCGTAGTTCAATTTCTAATAAAAGTGCTAAGGAATCCAAGCTCAATCCTGGAGCAAAAGTCTTCTCTCCTTCATTTACACATCCTAGATCAGTTACTCCTCCGGCAGTTCCTGCAGTTGCAAGTGTGGCTTATGTACCAAACAATTCAACTGTGGTTCCTGTTGCTTCTTCACAGCCAGAAATTGGAATTAGCCCTTTTGCACCTCGTTCATCTCTGCCTGTCAAGTTTGTTCCATACAGCAACCTGATAGCTGGAAACGGTGGCAGTGGTTCTCAATATTCACAACCTATTATTGGGCATATGGCAAGCAGGCTGCAGCCGGTTAGATATGCTGGTCAGTATCAGCCTGTACAAGCTGGACCTGCTTATGTACATCCAAATTCTCAAGCTGTTATGGTTGGACGGTTGGGGCAGCTTGTCTATGTGCATCCAGTTTCATATGATGTGGTTCCGGGTGCAGCAGCTATCTCACAACTATCTGCACGTCCTCTGTTGACGCCAAATCAGGTCCAATTTCCAAAGCACCAAGGAAGTGTACCATCCCAAGCACTGCAACTTTGTGTGCCTCCACCCGTTTTAGCTAATGGACAGCAGCCATTTGCAGTGCCAAGTCACATCCCTCTAGTCCAACCTCCTTTCCCTGCTAACCGCCCTATCCCAGTCCCAGGATCTAATGCTCTCTTCAATACTAAGTTTCCATGA 1728 0.4578 MGARAREFSDDGVSPSLSQALVFATMCIIGLPVEVHVKDGSVYSGILHTACLGKDYGIILKKARMIKKGKLEANVAHGGMVETLVILTGDLVQVVAKGVQLSDDDIVRNITGEDTEAVAGTIPSFECLGTEAKMLKPGNAAVHKKQINNTRNSVQNENGFAHGFMATPSEDNLMSKIVEHEVRRKEPSYLGSALEIENGKRDSKILAKSEEAPSFPDNGRQVGDDRIQGKQDHSKQKYEFHRKETAHEIQGSSSSSDACITHMKPVEAIDGKMASELLPNGVSHDGPAPSCVKPNKSCSERASAAVMDDISTGVSTSSNSVVGVTSVSCPTSLATPTEMVLPRSSISNKSAKESKLNPGAKVFSPSFTHPRSVTPPAVPAVASVAYVPNNSTVVPVASSQPEIGISPFAPRSSLPVKFVPYSNLIAGNGGSGSQYSQPIIGHMASRLQPVRYAGQYQPVQAGPAYVHPNSQAVMVGRLGQLVYVHPVSYDVVPGAAAISQLSARPLLTPNQVQFPKHQGSVPSQALQLCVPPPVLANGQQPFAVPSHIPLVQPPFPANRPIPVPGSNALFNTKFP* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0582 575 PANTHER ATAXIN 2-RELATED 219 533 IPR045117 GO:0003723
Vvi19g0582 575 MobiDBLite consensus disorder prediction 209 257 - -
Vvi19g0582 575 Pfam Ataxin 2 SM domain 19 97 IPR025852 -
Vvi19g0582 575 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0582 Vvi-Chr19 6436387 6451603 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0582 - - vvi:104877589 1110.52