Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0576 ATGCTGAAGTTCTCCTCATGGCGTCGCCCACCTCACGAAACCCTGACCCTAACTTCACCAATTCTCTCCATCTTTCGCCTTCTTACCCAATCCCCACCTCTCCCTGACCACATCCACGACCCCCCATTCTCCCTTACCTCAAACCCAAAAGACAACGTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAATGGAGAATCGAAGAAAGGCCAAACCTTTCCTTTCAAGTCCGATCTTCCCTTCGATTTTCGATACTCCTACTCCGAGGCCAATCCTTCAGTCCACCCGATTGGATTTCGCGAACCGCCTCGGTTTTCTCCGTTCGGCCCTGCTCGGCTAGACCGGAAATGGACTGGAACTGCGGCCCCCGCCGAAGAGGTGGTTGATCCGGCGGTGGTGTCAGAGCAGCGGAAGGCGGTTCTTGGAGAGCCTCTATCCGAGGATGAAATTGCAGAACTTGTGGAGCGGTATAGGCACAGTGATTGCTCTCGCCAGATCAATCTAGGGAAAGGGGGAGTTACTCACAATATGTTGGATGACATTCACAACCACTGGAAGAGGGCAGAGGCTGTGAGAATCAAGTGTTTGGGGGTGCCAACTCTTGACATGGAAAATGTTTGTTTCCACCTTGAGGACAAATGTGGTGGGAAGATTATATACAGGAACATAAATATCATTCTTTTATATCGGGGTCGGAACTATGATCCCAAGAACAGACCTGTTGTTCCTCTGATGCTGTGGAAGCCCTATGCACCCATTTATCCCAAGCTTGTGAAGCCTGTTGCTGATGGCCTAACATTTGAAGAGACCAAGGAAATGAGAAACAGAGGACTGAACTTGCCCCCTGTAATGAAACTCACCAAAAATGGTGTCTATGTGAATGTAGTGGAGAGAGTGAGGGAGGCATTCAGGAGTGAGGAGGTTGTGAGACTTGATTGTACTCATGTGGGCAGCAGTGACTGCAAAAGGATCGGTGTGAAGTTGAGGGATTTGGTACCTTGTGTCCCTATTTTGTTCAAGGATGAGCAGATTATACTATGGAAGGGGAAGAATGGTGAGGAACATGACTCTCAACACTGA 1089 0.4876 MLKFSSWRRPPHETLTLTSPILSIFRLLTQSPPLPDHIHDPPFSLTSNPKDNVKKKKKKKKKKKKENGESKKGQTFPFKSDLPFDFRYSYSEANPSVHPIGFREPPRFSPFGPARLDRKWTGTAAPAEEVVDPAVVSEQRKAVLGEPLSEDEIAELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILLYRGRNYDPKNRPVVPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVREAFRSEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWKGKNGEEHDSQH* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0576 362 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 49 357 IPR044599 GO:0000373
Vvi19g0576 362 SMART CRS1_YhbY_2 268 351 IPR001890 GO:0003723
Vvi19g0576 362 SMART CRS1_YhbY_2 148 233 IPR001890 GO:0003723
Vvi19g0576 362 SUPERFAMILY YhbY-like 268 356 IPR035920 -
Vvi19g0576 362 FunFam CRS2-associated factor 1, chloroplastic 147 244 - -
Vvi19g0576 362 Gene3D - 147 244 IPR035920 -
Vvi19g0576 362 MobiDBLite consensus disorder prediction 52 67 - -
Vvi19g0576 362 Pfam CRS1 / YhbY (CRM) domain 149 233 IPR001890 GO:0003723
Vvi19g0576 362 Pfam CRS1 / YhbY (CRM) domain 268 351 IPR001890 GO:0003723
Vvi19g0576 362 ProSiteProfiles CRM domain profile. 266 362 IPR001890 GO:0003723
Vvi19g0576 362 MobiDBLite consensus disorder prediction 33 76 - -
Vvi19g0576 362 FunFam CRS2-associated factor 1, chloroplastic 267 362 - -
Vvi19g0576 362 SUPERFAMILY YhbY-like 147 242 IPR035920 -
Vvi19g0576 362 Gene3D - 268 362 IPR035920 -
Vvi19g0576 362 ProSiteProfiles CRM domain profile. 146 244 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0576 Vvi-Chr19 6347194 6349234 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0576 - - vvi:100265780 711.064