Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0567 ATGGAGGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGCTGGCTCAGGCTCAAGGCTTTGTTACTATTGAAGAGGTGGAAGGACGGCTCTCCTGGCCCTCTGGGCGCGCCACTGATGCCCTTGAAACTTTATTGGACGAAGGTCTTGCAATGATTGATAATGGTCACAGAGATGGCAAACGCCGGTACTGGTTTCCCTGTGCATCTTCACTCTCTGCTGTAGGAGCTGATATTCTCAAGATTTGA 312 0.4712 MEVLGSGFEVISVGKRKLVRSVPTELNKDHNSILELAQAQGFVTIEEVEGRLSWPSGRATDALETLLDEGLAMIDNGHRDGKRRYWFPCASSLSAVGADILKI* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0567 103 Gene3D - 23 99 IPR036388 -
Vvi19g0567 103 FunFam Vacuolar protein sorting-associated protein 23 100 - -
Vvi19g0567 103 Pfam EAP30/Vps36 family 2 76 IPR040608 -
Vvi19g0567 103 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 2 91 IPR016689 GO:0000814|GO:0071985
Vvi19g0567 103 SUPERFAMILY "Winged helix" DNA-binding domain 26 89 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0567 Vvi-Chr19 6281385 6293711 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0567 K12188 - vvi:100252107 203.756