Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0566 ATGGCACCATCTTCTCCCTCCGCCTGTCTCCTCCAAACCACCCATCTCAGAACCTTCCTCATAATCTCTCTTCTGGTCTTTGTGCCCCCCATTCATGCGCTGAAACTCCCAATTTGGCCGCGGGACAGACAGCTCTCAAGGCCGATTCTCAACTCCCTCCACAGCGCAGTGGACCTTCTGCCCACTTTTGTGGGCTCTGTCTCCTCCAACGAGACTGTCGAGTGGACAGGAACGTGCTTTTACAAGACCAGTGCTTGGATGGAGTTCAACAACAAAAGTGGGAGCGAATTTGGTGGGGGCACACTTCATATTAAGGTTAGTAATGCGCATAGTTGGAAGTGTATGGACCTTTATGTCTTTGCAACTCCATACCAAGTGACATGGGATTACTACTTTTTGTCTCGGGAGCATACCGTTCAATTTGATGCATGGGAAGAAAAAGCTGAGTTTGAATACGTGAAAAACGAAGGGGTTTCAGTTTTTCTCATGCACGCTGGGATGCGGGGAACCCTTGAAGCTCTCTGGGATGTCTTCCCATTATTCACAAATACTGAATGGGGTGAGAACGCAAACCTTGGGTTTCTCAAGAAGCATATGGGGGCTTCATTTCAAACACGTCCTCAGCCATGGGTTACAAACATTAGTGTTGATGACATTCACTCTGGAGATTTCCTTGCAATATCAAAAATTCGTGGACGGTGGGGTGGTTTTGAGACTCTAGAGAAGTGGGTCACGGGATCTTATGCTGGTCATTCCGCAGTTTGCTTAAGGGATTCTGAAGGGAAGCTATGGGTTGGTGAATCAGGACATAGAAATGAAAAGGGAGAAGATGTTATTGTAACATTACCATGGGACGAATGGTGGGATGATGCACTAACTCAAGATGATTCCAATTCTCATATTGCGTTGCTTCCTTTGCATCCTCACCTCCGAGCCAAGTTTAATGAGACAGCTGCCTGGGAGTATGCACGTAGCATGGAAGGCAAACCTTATGGTTACCATAACATGATATTTAGCTGGATAGATGCTCTGGATGAAAACTATCCACCCCCCTTAGATGCTCATGTGGTTGCTGCAGGTATGACAGTTTGGAATCAAATGTGGCCTGCATATGCTGCTAACTTATGGAATGAGGCCTTGAACAAGAGGCTTGGAACTCAGAACCTTTCTCTTCCTGAGATTCTAATTGAAACTGAAACGCGTGGATCGTCATTTGCTGAATTGCTGACAATTCCTGAGCAGGATGATTGGGTTTACACTGATGGAAAGTCAACATCTTGTGTTGCTTTCATTCTGGAAATGTATAAGGAGGCAGGATTATTTGGTCCAATTGCTAGCTCTATTCAAGGAACTGAGTTCACGATAAAAGATGCATACACACTGAGTTTTTTTGAAAATGATTCAAGCCGCCTGCCAAAATGGTGCAATGATGGGGACATTGTGCAGCCTTATTGTCAGATAAAAGGAAAGTATCGAATGGAATTGCCAGAGTACAATACCCTGGATCCATACTCTCATATGAACGAAAAATGCCCATCCCTGCCTCCAAAATACTCGAGCCTCAATTTCAGCATCTCTTTACACCTCAGCAGCTTTCTTAACAGATTCGCTTTCACACGACTTCCGGCATGTTTGTAG 1638 0.4524 MAPSSPSACLLQTTHLRTFLIISLLVFVPPIHALKLPIWPRDRQLSRPILNSLHSAVDLLPTFVGSVSSNETVEWTGTCFYKTSAWMEFNNKSGSEFGGGTLHIKVSNAHSWKCMDLYVFATPYQVTWDYYFLSREHTVQFDAWEEKAEFEYVKNEGVSVFLMHAGMRGTLEALWDVFPLFTNTEWGENANLGFLKKHMGASFQTRPQPWVTNISVDDIHSGDFLAISKIRGRWGGFETLEKWVTGSYAGHSAVCLRDSEGKLWVGESGHRNEKGEDVIVTLPWDEWWDDALTQDDSNSHIALLPLHPHLRAKFNETAAWEYARSMEGKPYGYHNMIFSWIDALDENYPPPLDAHVVAAGMTVWNQMWPAYAANLWNEALNKRLGTQNLSLPEILIETETRGSSFAELLTIPEQDDWVYTDGKSTSCVAFILEMYKEAGLFGPIASSIQGTEFTIKDAYTLSFFENDSSRLPKWCNDGDIVQPYCQIKGKYRMELPEYNTLDPYSHMNEKCPSLPPKYSSLNFSISLHLSSFLNRFAFTRLPACL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0566 545 Gene3D endopeptidase domain like (from Nostoc punctiforme) 218 387 - -
Vvi19g0566 545 PANTHER OS01G0793500 PROTEIN 36 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0566 Vvi-Chr19 6273383 6279227 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0566 - - vvi:100241838 1099.73