Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g0563 | ATGAGACGACGACCTGGAATTGGCGGTTTACAGACCGCTGCTGCCACTAGGGATCAGTATCGGTTGCTCGGAGAAAATGTAGCGAAGATACGAACAGATCTCATGAAGGAGCAACTCACCACGTTTCGATCTCAGTTGGAAGATTTTGCTCGCAAACACAAGAATGACATTCGCAAGAACCCTGCTTTCAGATCACAGTTCCATGAGATGTGTGCTAAAGTAGGAGTAGACCCCTTGGCATCGAATAAGGGATTTTGGGCAGAGCTATTAGGAATTGGTGACTTCTATTATGAACTTGGTGTGCAAATTGTTGACATATGCTTAGCGACAAGAGTTCACAATGGAGGTTTGATCGACTTGCAGGAACTGTGCAATTTGCTTTGCCAGAGACGTAAAAGTGCTCATGGAGCTGTATCTGAAGATGACTGCTTGCGTGCCATAAGTAAGCTGAAGGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATGCAATTCTAGAGCTGGCTCAGGCTCAAGGTTTTGTTACTGTTGAAGAGGTGGAAAGACGGCTCTCCTGGCCCTCTGGGCGCGCCACTGATGCCCTTGAAACTTTATTGGACGAAGGTCTTGCAATGATTGATGATGGTCACAGAGATGGCAAACGCCGGTACTGGTTTCCCTGTGCATCTTCACTCTCTGCTGTAGGAGCTGATATTCTCAAGATTTGA | 759 | 0.4625 | MRRRPGIGGLQTAAATRDQYRLLGENVAKIRTDLMKEQLTTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRVHNGGLIDLQELCNLLCQRRKSAHGAVSEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHNAILELAQAQGFVTVEEVERRLSWPSGRATDALETLLDEGLAMIDDGHRDGKRRYWFPCASSLSAVGADILKI* | 253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g0563 | 252 | Gene3D | - | 91 | 171 | IPR036388 | - | |
| Vvi19g0563 | 252 | Gene3D | - | 24 | 85 | - | - | |
| Vvi19g0563 | 252 | PANTHER | EAP30 SUBUNIT OF ELL COMPLEX | 1 | 240 | IPR016689 | GO:0000814|GO:0071985 | |
| Vvi19g0563 | 252 | Pfam | EAP30/Vps36 family | 6 | 225 | IPR040608 | - | |
| Vvi19g0563 | 252 | SUPERFAMILY | "Winged helix" DNA-binding domain | 175 | 238 | IPR036390 | - | |
| Vvi19g0563 | 252 | PIRSF | ESCRT2_Vps22 | 1 | 245 | IPR016689 | GO:0000814|GO:0071985 | |
| Vvi19g0563 | 252 | FunFam | Vacuolar-sorting protein SNF8 | 91 | 171 | - | - | |
| Vvi19g0563 | 252 | Gene3D | - | 172 | 248 | IPR036388 | - | |
| Vvi19g0563 | 252 | FunFam | Vacuolar protein sorting-associated protein | 172 | 248 | - | - | |
| Vvi19g0563 | 252 | SUPERFAMILY | "Winged helix" DNA-binding domain | 24 | 174 | IPR036390 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi19g0563 | Vvi-Chr19 | 6254808 | 6263368 | Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi19g0563 | K12188 | - | vvi:100262383 | 505.368 |