Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0552 ATGGCTTCAATCCCATGCACTACCCATTTACTCTTCACATCAAAACCCCAAATTTCTCCTTCAAATCCACCCATTTTTACTTCTCAGTTACTGGGTATCCCAAGAAAACTGTCATGGTCCACACCCACCAGACTTGGACCCAGCAATGGCTCCAGAGCCACATGCTGGTTCAGGTTTGGTAACAGGGGTGTTGATGCTGAAGGAGCTGGGATCTATGGTAGCCAAACAAGGGATGATTTTGACAGAGATGATGTTGAACAGTACTTCAACTACATGGGGATGCTTGCTGTTGAGGGTACGTATGATAAGATGGAGGCTCTTCTAAGCCAAAACATCCATCCAGTAGACATCTTATTGATGATGGCTGCCTCAGAAGGTGACCAGCCCAAAATTGAAGAGCTTTTGAGGGCTGGAGCTAGTTACACTGTCAAGGATGCAGATGGGCGGACTGCACTTGAAAGAGCTGCCAATGATGAAATCAAAGACTTGATCCTCAACTTTTCTACTCAAAAGGCTTGA 519 0.4566 MASIPCTTHLLFTSKPQISPSNPPIFTSQLLGIPRKLSWSTPTRLGPSNGSRATCWFRFGNRGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMMAASEGDQPKIEELLRAGASYTVKDADGRTALERAANDEIKDLILNFSTQKA* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0552 172 Gene3D - 94 172 IPR036770 -
Vvi19g0552 172 PANTHER PROTEIN LHCP TRANSLOCATION DEFECT 1 172 IPR044242 GO:0006886|GO:0009570|GO:0090391
Vvi19g0552 172 FunFam Protein LHCP TRANSLOCATION DEFECT 79 171 - -
Vvi19g0552 172 SUPERFAMILY Ankyrin repeat 94 162 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0552 Vvi-Chr19 6182172 6184581 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0552 - - vvi:100260680 349.747