Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0549 ATGGCCATGATCAAGAAGAAGACCAATGCCGACATGTTCTCATTTCTTCCAGACCATGTCATCTCTCTCATCCTGTCCTTCTTACCCTTCATAGATGCTGCCAGAACCAGCGTTTTGTCCAAGAGATGGCGCCATATATGGCACGCAACGGTAAGAATCGAGTTTGATGAGAGTTTCTTTGTGAAAAGAGAAGAATCCACTGAGAAAAGAGAATTGGCGAGATGCGGTTTCATCGATTTTATGAGACAGTGGATGCTTAACTATAAGGAGCCAGTGGTGGAGACATTTAGCCTCTCATTCACCAACCCCGGAGAATATCGTTTGGACATGGAGAATTGTCTGAGATTCGCCATTCTCCGAGGAACAAGAGGCCTGTATCTTGACTTTGCTGATCCATCATGGGGGGAAGACGAGTTTGATCCACATCTCAGGCTGTTCCAGCTGCCAACATTTGTTTACAAACATAAAGTTCTTGAATCCTTGAAGCTGTTTTCATGCAGATTCGATGTTTCTGAGTTCAGCGCCTTCAGTGTCCTCAAGGATCTTTCTCTGGGATGGGTAGAAGTTAGAAGCTCTTCTCTAAAAGCCTTGCTGATGAACTGTCCCCTTCTGGAGGGTCTGTGCTTGAAGAACTGTTGGAATTTAGGCGATCCTGATATTTCAGGGCCAAATCTGAGGCTTCGGAGGCTGATCATAGATAAATGTTCTATCGACAATCACATTATACTCATGGCACAGAAGCTACAATACTTCAAGTACTCAGGATTGGTGAAAAGTTTTCTCTTAGAAGACCAACCTGATGTGGAGGAGGCCGAACTCGATTTTGGGCTCGAGTCCGAATTCGACAACAGTGGCTACTGTGGTGATACCCTGCAAGACATCCTCAGAAATATCTATTCCAATACTTTAACTGTATGCAGTTACATGCTACAGGAACTTCCGTCCGGGGAGGAGCCACTGCGCTTGTACCCTTACCTTGATGACATGCGGCATCTGATACTGAAGACCTCAATGCATTCATATGAACTCTATGGAATTTCCTTCCTGCTAAAAAGCTGCCCCGGGTTAGACATGCTCACCATTGATCTAGGCCCGGCCAGAATATTTGCTGATTATGAACCACCATTTCAGATTCAGAGTCATGTATTCTGGGCACAACATATACCATTTATTGACTGTGTAAGAGAAACATTGAAGGTGGTGGAAGTAAATGGCTTCAAAGGGGAGCCGAACGAAATCGAACTGCTGCAGAATGTGCTCCGGTATGGGTGTGTGTTGGAGAGAATGAGAATCAATGTCATAAAGAGTAGTGATTCGGATCCGACTTATCAATGGCGGGCTCAAATGTTGCAGTATTTCACAAAAGCCTCTCGGAGGCTGCAAGTTGTGATCTCTTAG 1398 0.4492 MAMIKKKTNADMFSFLPDHVISLILSFLPFIDAARTSVLSKRWRHIWHATVRIEFDESFFVKREESTEKRELARCGFIDFMRQWMLNYKEPVVETFSLSFTNPGEYRLDMENCLRFAILRGTRGLYLDFADPSWGEDEFDPHLRLFQLPTFVYKHKVLESLKLFSCRFDVSEFSAFSVLKDLSLGWVEVRSSSLKALLMNCPLLEGLCLKNCWNLGDPDISGPNLRLRRLIIDKCSIDNHIILMAQKLQYFKYSGLVKSFLLEDQPDVEEAELDFGLESEFDNSGYCGDTLQDILRNIYSNTLTVCSYMLQELPSGEEPLRLYPYLDDMRHLILKTSMHSYELYGISFLLKSCPGLDMLTIDLGPARIFADYEPPFQIQSHVFWAQHIPFIDCVRETLKVVEVNGFKGEPNEIELLQNVLRYGCVLERMRINVIKSSDSDPTYQWRAQMLQYFTKASRRLQVVIS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0549 465 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 12 458 - -
Vvi19g0549 465 ProSiteProfiles F-box domain profile. 10 63 IPR001810 GO:0005515
Vvi19g0549 465 SMART 9598neu4hmm 392 465 IPR006566 -
Vvi19g0549 465 CDD F-box_AtFBL13-like 13 47 - -
Vvi19g0549 465 Gene3D Ribonuclease Inhibitor 135 265 IPR032675 -
Vvi19g0549 465 Pfam FBD 391 431 IPR006566 -
Vvi19g0549 465 SUPERFAMILY F-box domain 10 50 IPR036047 GO:0005515
Vvi19g0549 465 Pfam F-box domain 13 47 IPR001810 GO:0005515
Vvi19g0549 465 Gene3D - 1 50 - -
Vvi19g0549 465 SMART fbox_2 16 55 IPR001810 GO:0005515
Vvi19g0549 465 SUPERFAMILY RNI-like 147 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0549 Vvi-Chr19 6167525 6169106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0549 9 211 EF-hand Containing Proteins AT5G41840 28.230 2.67e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0549 - - vvi:104877587 949.888