Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0548 ATGGCCGCCTCTGCAAAAACCCCAATCTCCAGAACCCAGACCACGTCTCTCTATAAGCCCTACAGCAGTTCTCCCCAATTGCCCTTCAAACTCCTCAAGCTTACACCTACCCCTTGCGCCGCCAAAGGGCTGTCCATTTGCTGTGCCCTGCAAATGGAGCCCAAGGTTGGACCTGGTTCGCAGGTGCCGGATTCGTTTGGCCGGTTCGGGAAATTCGGAGGGAAGTACGTTCCCGAAACTCTGATGCATGCCCTCACCGAGCTGGAGTCTGCATTCCGGGCTCTCTCTGGAGACGTAGAATTTCAGAAAGAACTAGATGGAATATTGAAGGACTATGTTGGCAGGGAGAGCCCTCTTTATTTTGCAGAGCGGCTTACGGAGCACTATAAGCGTCACAATGGTGAAGGGCCACTCATTTACCTCAAGAGGGAAGATCTGAACCATACTGGGGCTCACAAGATTAACAATGCTGTTGCCCAAGCTCTGCTTGCCAAGCGTTTGGGAAAAACACGCATTATTGCTGAAACTGGTGCTGGTCAGCATGGAGTTGCAACTGCAACTGTATGTGCTCGGTTTGGATTGCAGTGTATTGTTTATATGGGTGCCCAAGATATGGAAAGGCAGGCACTTAATGTTTTCAGAATGCGGCTTCTTGGGGCTGAGGTTAGAGCTGTTCATGCTGGGACAGCTACTCTGAAAGATGCAACATCAGAAGCTATACGAGACTGGGTGACTAATGTGGAGACAACCCATTATATTTTGGGTTCTGTTGCTGGGCCCCATCCTTATCCCATGATGGTCAGGGACTTCCATGCAGTGATTGGCAAAGAAACAAGAAAACAGGCAATGGAAAAGTGGGGAGGCAAACCAGATGTGCTGGTTGCATGTGTAGGTGGAGGTTCCAATGCCATGGGGCTTTTTTATGAATTTGTTGATGATGAAGACGTTAGGCTGATTGGTGTGGAGGCAGCAGGTTTTGGCTTAGATAGCGGTAAACACGCTGCTACCTTGACTAGAGGGGAGGTTGGGGTCTTGCATGGCGCGATGAGTTATTTATTACAAGATGATGATGGACAAATAATTGAGCCTCATTCTATTAGTGCTGGCCTGGATTACCCTGGAGTTGGGCCAGAGCATAGCTTTCTGAAAGATTTAGGACGTGCTGAATACCATAGCATCACTGATGAAGAAGCATTGGAAGCTTTCAAGAGATTATCTCGACTTGAAGGCATAATCCCTGCTCTGGAGACATCGCATGCCCTGGCTTATTTGGAGAAGCTGTGCCCAACCCTCCCAAATGGGACTAAGGTTGTACTTAATTGCAGTGGGAGAGGAGATAAGGATGTTCATACAGCCATTAAGCATTTGCAGGTTTGA 1377 0.4851 MAASAKTPISRTQTTSLYKPYSSSPQLPFKLLKLTPTPCAAKGLSICCALQMEPKVGPGSQVPDSFGRFGKFGGKYVPETLMHALTELESAFRALSGDVEFQKELDGILKDYVGRESPLYFAERLTEHYKRHNGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHAGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFYEFVDDEDVRLIGVEAAGFGLDSGKHAATLTRGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDLGRAEYHSITDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0548 458 PIRSF Trp_syn_beta 57 458 IPR023026 GO:0000162|GO:0004834
Vvi19g0548 458 FunFam Tryptophan synthase beta chain 119 268 - -
Vvi19g0548 458 Hamap Tryptophan synthase beta chain [trpB]. 62 456 IPR023026 GO:0000162|GO:0004834
Vvi19g0548 458 FunFam Tryptophan synthase beta chain 269 449 - -
Vvi19g0548 458 Gene3D - 69 271 IPR036052 -
Vvi19g0548 458 CDD Trp-synth_B 84 451 IPR006654 GO:0004834|GO:0006568
Vvi19g0548 458 NCBIfam tryptophan synthase subunit beta 67 455 IPR006654 GO:0004834|GO:0006568
Vvi19g0548 458 Gene3D - 114 449 IPR036052 -
Vvi19g0548 458 Pfam Pyridoxal-phosphate dependent enzyme 113 443 IPR001926 -
Vvi19g0548 458 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 146 160 IPR006653 GO:0004834|GO:0006568
Vvi19g0548 458 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 63 455 IPR036052 -
Vvi19g0548 458 PANTHER TRYPTOPHAN SYNTHASE-RELATED 42 457 IPR023026 GO:0000162|GO:0004834
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0548 Vvi-Chr19 6158588 6161928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0548 K01696 - vvi:100264166 912.909