Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0545 ATGGGTTGCACAGGAAAAGCTCAAAAGCGTATGAGAAAAATACAAACAAACTCAGAAAATAGGCACAACCAGAATCAGAATGACTTCATTAGCAGATTACCAGAGGATATTCTTCTTATTATCTTAAACAAACTGCCCATGGAAGATGCTGTGGCTACCTCCTTACTCTCATCGAAGTGGAGGGACTTATGGAAGCTCACTTCTAATGTGGATTTCAACTATCGATGGGTGCAAGTCAGGAGAAAAGAAATCCATCCATCTGTGAACCACTTTGTCCGCTCGCACCATGGCAAGGAGATCAAATGCTTTTCTGTCTCTTTGAGGTGTAAGAAGAGTATGGTGCCTGATGTGCAGTCTTGGATTACTTATGCAGCTAAAAAAAATGTTGAAGAACTGTGCATCAACTTGAATGATAGGGAAGATAACAGGAAGAACAGAACGTATCATTTGCAGCATTTGTGTTTTCCTGCCTGTGATTTGAGCTTTTCTTCCCTGGTGAAGCTAATCCTCAAGTTTCTATGGCTGGATATGGATTACTTCCCTCACTGTGAGTCCCTGAAAGAGCTTCACCTAGAAAAGCTTGTATTGCCTAATGATGAAATCAATGGAATCACTGAAAAATCTCCAGCACTGCAATTCTTGTGCTTGATTAACTCTAATCTGAGTGAGAATCTCCATGTTAACATTTCTCCAAATTCTAATCTTCGGAAGCTGATAATTGAGGATGAGTTTGTGGAGTATAACAGGATGCAGCATATTTTTATCAATGCTCCAAAAATTACGAGGATAGAGTTTTTGTCAAGCATGCCAAAGAGGAAGTACCATATAGTGAATATGGGGGTTGGTATTGAAGCAAGGTTCAACTTGAATAGGATGTTTCGTGAGCGAGGAGAAGCCAAGGCCACCTGTAATGGTGTGCTTGTTTGCCGGTATCAGCAGAACCTCCTGGGTCTACTCAAGACGTTTCAGACTGCTAAGGTACTTGAAGTATGCAGCTGGTGTATTCAGGTTTTATCTATATTAAAGGTCAGACAGCAGGAAATTCTGTTGTTTGAGGCAACCCATCTCGTGCTGAATACCGGACTGAATGGCTGGGAGCTTCCAGGGATTGCACTGCTGCTGAGGGCCTGTCGCAAGCTGGAGAATCTTGTCATAGTTATGAATGATGAAGCTGAAGAGTTACAATTCAATGATGCTTTCCAACGAATTTATGCTTTTAAACAAGAATTTTACTGGAAGAACCAAGGTGCTTCCTCCACTGTCTGCTTGCAACAACTGGCTGTTGTTGAGTTCAGGATCCCTCATGGAGTTAAGTTTTTTCGAGTGACCGATAACGACATTTGA 1344 0.4167 MGCTGKAQKRMRKIQTNSENRHNQNQNDFISRLPEDILLIILNKLPMEDAVATSLLSSKWRDLWKLTSNVDFNYRWVQVRRKEIHPSVNHFVRSHHGKEIKCFSVSLRCKKSMVPDVQSWITYAAKKNVEELCINLNDREDNRKNRTYHLQHLCFPACDLSFSSLVKLILKFLWLDMDYFPHCESLKELHLEKLVLPNDEINGITEKSPALQFLCLINSNLSENLHVNISPNSNLRKLIIEDEFVEYNRMQHIFINAPKITRIEFLSSMPKRKYHIVNMGVGIEARFNLNRMFRERGEAKATCNGVLVCRYQQNLLGLLKTFQTAKVLEVCSWCIQVLSILKVRQQEILLFEATHLVLNTGLNGWELPGIALLLRACRKLENLVIVMNDEAEELQFNDAFQRIYAFKQEFYWKNQGASSTVCLQQLAVVEFRIPHGVKFFRVTDNDI* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0545 447 Gene3D Ribonuclease Inhibitor 88 284 IPR032675 -
Vvi19g0545 447 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g0545 447 SUPERFAMILY RNI-like 149 260 - -
Vvi19g0545 447 ProSiteProfiles F-box domain profile. 27 79 IPR001810 GO:0005515
Vvi19g0545 447 Pfam F-box domain 30 65 IPR001810 GO:0005515
Vvi19g0545 447 CDD F-box_AtFBL13-like 30 65 - -
Vvi19g0545 447 SMART fbox_2 33 74 IPR001810 GO:0005515
Vvi19g0545 447 Gene3D - 10 69 - -
Vvi19g0545 447 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 29 432 - -
Vvi19g0545 447 SUPERFAMILY F-box domain 26 69 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0545 Vvi-Chr19 6135227 6137647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0545 26 384 EF-hand Containing Proteins AT5G41840 23.291 8.88e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0545 - - vvi:109121764 692.96