Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0544 ATGTGGGTCTCTGAAGTCTCACTTCACCATTTCTCATTGCCAAACTCTTCCCAATTCGACATCCCAAACAACCTCACCACAAGATGGAGGCACAAGTTCACTTCAGTAAGGTGCAGTAGCAGAAGTGATGGTCAAAGTGCAAGAACAAGGAAGAGTTACTATGAGTTGCTTGGAGTTTCTGTTGATTCAAATCCCCAGGAGATCAAAGAAGCTTACAGGAAGCTTCAAAAGAAATATCACCCAGATGTTGCAGGCCAAAAGGGACATGAGTACAGTTTGATGCTGAATGAGGCGTATAGGGTTCTGGCAAGGGAAGATCTCAGAAGAGAGTATGACGCTTCAATCGGCAAAATGAGAGTGGGGTTTGGGGGAATCTTTTCTGGCATGGGTTACAGTGCATGGAAAGGCCCCTTGAGACCCCAAGCTCTGTTTGTTGATGAAAATAAATGCATAGGTTGCAGAGAATGTGTCCACCATGCAGGTAACACTTTTGTAATGGATGATGCTCTTGGGTGCGCAAGAGTCAAGGTTCAATATGGAGATGATGACAAGAAAATTGAGGTTTCGGTTGATTCATGCCCAGTAAACTGCATTCACTGGGTGGATAGGGAAGAGTTGGCAATACTTGAGTTCCTGATTCAGCCTCAACCCAAGGAAGGTTATGGTGTTTTTGGAGGAGGATGGGAAAGGCCTGCAAATGTTTTCATGGCTGCTAAGGCCTTCAACAAGCAACTGAAACAGCAGGCTGACCATCATCAAAGAAATGCATCCAGAACCGTTGAAGAAGAGACTCCAGCTCAGGCAGAGGCTCGGGCCAATGCAAGTATGAAAATAAAGATGGAGAGATTATCAAGGATTTGGAATTGGGTGAAGGAAGTCTCTGGCTCCAACAAGGCAAATAAAGAGTAA 909 0.4499 MWVSEVSLHHFSLPNSSQFDIPNNLTTRWRHKFTSVRCSSRSDGQSARTRKSYYELLGVSVDSNPQEIKEAYRKLQKKYHPDVAGQKGHEYSLMLNEAYRVLAREDLRREYDASIGKMRVGFGGIFSGMGYSAWKGPLRPQALFVDENKCIGCRECVHHAGNTFVMDDALGCARVKVQYGDDDKKIEVSVDSCPVNCIHWVDREELAILEFLIQPQPKEGYGVFGGGWERPANVFMAAKAFNKQLKQQADHHQRNASRTVEEETPAQAEARANASMKIKMERLSRIWNWVKEVSGSNKANKE* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0544 302 PRINTS DnaJ domain signature 72 87 IPR001623 -
Vvi19g0544 302 PRINTS DnaJ domain signature 54 72 IPR001623 -
Vvi19g0544 302 Pfam DnaJ domain 53 112 IPR001623 -
Vvi19g0544 302 Coils Coil 242 262 - -
Vvi19g0544 302 SMART dnaj_3 51 107 IPR001623 -
Vvi19g0544 302 Gene3D - 141 203 - -
Vvi19g0544 302 SUPERFAMILY 4Fe-4S ferredoxins 143 202 - -
Vvi19g0544 302 CDD DnaJ 53 102 IPR001623 -
Vvi19g0544 302 ProSiteProfiles dnaJ domain profile. 52 115 IPR001623 -
Vvi19g0544 302 MobiDBLite consensus disorder prediction 248 274 - -
Vvi19g0544 302 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 141 169 IPR017896 -
Vvi19g0544 302 PANTHER CHAPERONE PROTEIN DNAJ C76, CHLOROPLASTIC 25 300 - -
Vvi19g0544 302 Gene3D DnaJ domain 36 120 IPR036869 -
Vvi19g0544 302 Pfam 4Fe-4S single cluster domain of Ferredoxin I 145 200 - -
Vvi19g0544 302 SUPERFAMILY Chaperone J-domain 49 138 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0544 Vvi-Chr19 6133045 6134532 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0544 - - vvi:100854700 626.706