Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0543 ATGTGGGTCTCTGCAGTCTCACTTCACCATTTCTCATTGACAAACTCTTCCCAATTCGACAACCCAAACAACCTCATCACAAGATGGAAGCCCGAGTTCACTTCAGTAAGGTGCAGTACCAGCACTGCAGGTCGAAGAAGCGCGAGAACAAGGAAGAGTTACCATGAGTTGCTTGGAGATTCTGTTGACTCAAATACTCAGCAGATCAAAGAAGCTTACAGGAAGCTTCAAAAGAAATATCACCCAGATGTTGCAGGCGAAAAGGGACATGAGTACAGTTTGATGCTGAATGAGGCGTATGGGGTTCTGGCATGGGAAGATCTCAGAAGAGAGTATGATGCTTCAATCGGCCAAATGAGAGTGGGGTTTTGGGGAAGCTTTTCTGGCTTGGGTTACCGTTCATGGAAAGGCCCCTTAAGACCCCAAGCATCTATAGGTAGCAGAGAATGCGTCCACCATGCAGGTAACACTTTTGTGATGGTAGATGCTCTTGGGTGTGCAAGAGTCAAAGTTCGGTATGGAGATGATGACAAGAAAATTGAGGTTTGGGTTGATTCATGCCTAGTAAACTGGATTCACTGGGTGGATAGGGAAGAGTTAGCAATACTAAAGTTCCTGATTCAGCCTCAACCTCAGGAAGGCTATGGTGTTTTTGGAGGAGGATGGGAAAGACCTGCAATTGTTTTCATGGCAGCCAAGCCCTCCAAAAAGCGGCCCAATCAGCAGGATGACTACAATCGAATGAATGCATCCAGAGAAGAAAAGACTTCCAATTCATTTGTGGAAAAAGTGAAGGAAATTGTCAGTAGTCGTGTTGCTTTTCTGGTGGGACTCGTCTCAGAAAAAGGAAAATGA 855 0.455 MWVSAVSLHHFSLTNSSQFDNPNNLITRWKPEFTSVRCSTSTAGRRSARTRKSYHELLGDSVDSNTQQIKEAYRKLQKKYHPDVAGEKGHEYSLMLNEAYGVLAWEDLRREYDASIGQMRVGFWGSFSGLGYRSWKGPLRPQASIGSRECVHHAGNTFVMVDALGCARVKVRYGDDDKKIEVWVDSCLVNWIHWVDREELAILKFLIQPQPQEGYGVFGGGWERPAIVFMAAKPSKKRPNQQDDYNRMNASREEKTSNSFVEKVKEIVSSRVAFLVGLVSEKGK* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0543 284 SMART dnaj_3 52 108 IPR001623 -
Vvi19g0543 284 MobiDBLite consensus disorder prediction 233 257 - -
Vvi19g0543 284 CDD DnaJ 54 103 IPR001623 -
Vvi19g0543 284 PANTHER CHAPERONE PROTEIN DNAJ C76, CHLOROPLASTIC 15 271 - -
Vvi19g0543 284 Gene3D DnaJ domain 38 121 IPR036869 -
Vvi19g0543 284 Pfam DnaJ domain 54 113 IPR001623 -
Vvi19g0543 284 Gene3D - 141 197 - -
Vvi19g0543 284 ProSiteProfiles dnaJ domain profile. 53 116 IPR001623 -
Vvi19g0543 284 MobiDBLite consensus disorder prediction 237 257 - -
Vvi19g0543 284 SUPERFAMILY Chaperone J-domain 50 135 IPR036869 -
Vvi19g0543 284 PRINTS DnaJ domain signature 55 73 IPR001623 -
Vvi19g0543 284 PRINTS DnaJ domain signature 73 88 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0543 Vvi-Chr19 6129791 6131282 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0543 - - vvi:100855066 581.252