Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0537 ATGGTTTCCACCAGCAAGATCAAATCTGTGGATTTTTACAGAAAAATTCCTAGGGATTTGACGGAGGCATCATTATCGGGTGCAGGGTTATCCGTAATAGCAGCCTTATCCATGATGTTTCTATTTGGAATGGAACTGAGTAATTATTTGTCAGTGAGCACCTCTACATCTGTTATTGTTGACCAGAGTTCTGATGGGGATTTCTTACGAATTGAATTCAATATCAGTTTTCCTGCTCTCTCATGTGAATTTGCATCAGTTGATGTGAGTGATGTGCTGGGAACAAACAGGCTGAACATAACAAAAACTATTCGTAAGTATTCAATAGATCCAGATTTAAGACCTACTGGCGCTGAGTTTCATTCAGGACCAGTTGGGAAAGTCATCAAGCATGGAGATGAAACTGATGAAGAATATAGTGAAGGTTCTGCTTCACTAACAGCTCAGAATTTTTATAAATATTCACATCAGCATGCTATTTTGGTTGTCAATTTCTTTGCTCCTTGGTGCTATTGGAGTACTCGCCTGAAACCTTCATGGGAGAAGGCGGCCAAAATAATAAGAGAAAGATATGACCCAGAATTGGATGGGCGAATTGTTATGGCAAAGGTTGACTGCACTGAAGAAGGTGAATTGTGTAGGAGGCATCACATACAGGGTTATCCGTCTATTCGTATTTTCCGTAAAGGAAGTGATGTGAGGGACGATCACGGACACCATGATCACGAATCCTATTATGGAGATCGAGATACAGATACCCTGGTTACTACGATGGAAACTTTGGTTGCTCCAATTCCACTGGAGTCTCAGAGGCTAGCTTTGGAGAATAAATCTGATAGTACGGCAGACCATATAAAACGTCCTGCACCCAGAACAGGTGGATGCAGAATTGAAGGTTTTGTGCGTGTTAAGAAGGTTCCAGGCAACCTTGTCATTTCAGCTCGCTCGGGATCCCATTCCTTTGATCCCTCTCAAATGAACATGTCACATGTTATTTCCCACCTTTCATTTGGCAGAAAGATTGCACCAAGGGTGATGAGTGATATGAAACGAGTGCTACCATATATTGGTGGAAGCCATGATAGATTGAATGGCCGGTCATATATTAGTCATCCTAGTGATTCAAATGCAAATGTTACTATAGAGCATTATCTTCAAGTAGTGAAAACAGAGGTGATAACAACTCGTGATCATAAGTTGGTCGAGGAGTATGAGTACACAGCCCACAGTAGTTTGGTGCAGAGTTTATATATCCCTGTTGCAAAATTCCATTTCGAGCTATCTCCTATGCAGGTCTTAGTGACAGAAAATAGGAAGTCCTTCTGGCACTTTATTACAAATGTCTGTGCCATCATTGGAGGTGTTTTCACGGTTGCTGGGATATTGGACTCAGTTCTGCACAACACAATGAGACTGATGAAAAAGATTGAACTAGGGAAAAATTTTTGA 1449 0.4113 MVSTSKIKSVDFYRKIPRDLTEASLSGAGLSVIAALSMMFLFGMELSNYLSVSTSTSVIVDQSSDGDFLRIEFNISFPALSCEFASVDVSDVLGTNRLNITKTIRKYSIDPDLRPTGAEFHSGPVGKVIKHGDETDEEYSEGSASLTAQNFYKYSHQHAILVVNFFAPWCYWSTRLKPSWEKAAKIIRERYDPELDGRIVMAKVDCTEEGELCRRHHIQGYPSIRIFRKGSDVRDDHGHHDHESYYGDRDTDTLVTTMETLVAPIPLESQRLALENKSDSTADHIKRPAPRTGGCRIEGFVRVKKVPGNLVISARSGSHSFDPSQMNMSHVISHLSFGRKIAPRVMSDMKRVLPYIGGSHDRLNGRSYISHPSDSNANVTIEHYLQVVKTEVITTRDHKLVEEYEYTAHSSLVQSLYIPVAKFHFELSPMQVLVTENRKSFWHFITNVCAIIGGVFTVAGILDSVLHNTMRLMKKIELGKNF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0537 482 CDD PDI_a_family 146 258 - -
Vvi19g0537 482 ProSiteProfiles Thioredoxin domain profile. 98 263 IPR013766 -
Vvi19g0537 482 Pfam Endoplasmic reticulum vesicle transporter 286 463 IPR012936 -
Vvi19g0537 482 SUPERFAMILY Thioredoxin-like 144 259 IPR036249 -
Vvi19g0537 482 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Vvi19g0537 482 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 5 481 IPR045888 -
Vvi19g0537 482 FunFam Protein disulfide-isomerase 5-4 131 287 - -
Vvi19g0537 482 Pfam Thioredoxin 145 243 IPR013766 -
Vvi19g0537 482 Gene3D Glutaredoxin 132 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0537 Vvi-Chr19 6035423 6049811 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0537 - - vvi:100265937 971.074