Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0534 ATGTGGTTTGATACTGGAGCTCCCACCGATTCCTTCTACGAGGTTAGGGCCGAGTGCTCGGATGTGCCAAAAACCCGATTCAAAATCAAGGCTGGAAAAACTCTAAGTGAAAGAAGATGGAAGGCTGCATTTAGTCCAGAAGGTCATCTTGAAATGAGCAGGATGCTTAGTAGAATCCAAAGAGGGGGAATCCATCCAACAATTAGAGGAGAAGTTTGGGAATTTCTGCTTGGTTGTTATGATCCAAAGAGCACATATGAGGAAAGAGAGCAAATACGGCAACGTCGAAGGGAACAATATGCTAAATGGAAGGAACAGTGCTGCCAAATGTTTCCTGTTATTGGGAGTGGCAGATATATCACAGCACCTATTATTACTGACGATGGTCAGCCCATTCAAGATCCTTTGGTACTTCTTGAAGCAAATCCACAGAAGGGTTCGGCTTTACCTCATGATAATGGTGATGCTCAAGACTCGGAGCTTTCAACTTCCAACAGCTCAGAAACAAAGAAACCAATTAATCATCCTCCAATTGACAAGAAGGAAATCCAGTGGAAGCTTACACTACATCAAATAGGTCTCGATGTGGTTCGCACTGACAGGACATTAGTTTTTTATGAGAAGCAAGAAAATCTGGCAAAACTTTGGGATATTCTAGCTGTTTATGCATGGATAGACACAGATATTGGCTACTGTCAAGGCATGAGTGATCTCTGCTCCCCAATGATAATGCTTCTTGAAGACGAAGCAGATGCATTTTGGTGCTTTGAACATTTGATGCGCAGATTGCGAGGGAATTTCAGATGCACCGACAGCTCTGTTGGAGTGGAGACACAGCTTAGTAATTTAGCTTTAATTACTCAAGTTATTGATCCAAAACTTCATCAGCACTTAGAGACACTAGGTGGAGGTGACTATCTATTTGCTTTCCGAATGCTTATGGTTTTGTTTCGCAGAGAATTTTCTTTTGGTGACTCATTGTATCTTTGGGAGATGATGTGGGCTTTGGAGTATGATCCAGATTTCTTCTCCATGTATGAAGAGACTGACTCAGCTAATGAAAAAGCTGAGGGATCTAAAGGAAAACCAAAGTCGATGCACCAGTATGGAAAGTTTGAGAGGGAAAATATGAAAAATAAAATAAAAAATGGAGAAGCTCCCCTCCCCATTTCTGTTTTCCTCGTTGCCAGTGTCTTGAAAGAGAAGAGCTCAAAGCTACTTACAGAAGCTCGGGGATTGGATGATGTTGTTAAGATATTGAATGACATAACTGGGAATCTGGATGCCAAAAAGGCTTGCACCGGGGCAATGAAACTTCACAGGAAATATCTAAAAAAGGCCAAGAAGGTATAG 1353 0.4176 MWFDTGAPTDSFYEVRAECSDVPKTRFKIKAGKTLSERRWKAAFSPEGHLEMSRMLSRIQRGGIHPTIRGEVWEFLLGCYDPKSTYEEREQIRQRRREQYAKWKEQCCQMFPVIGSGRYITAPIITDDGQPIQDPLVLLEANPQKGSALPHDNGDAQDSELSTSNSSETKKPINHPPIDKKEIQWKLTLHQIGLDVVRTDRTLVFYEKQENLAKLWDILAVYAWIDTDIGYCQGMSDLCSPMIMLLEDEADAFWCFEHLMRRLRGNFRCTDSSVGVETQLSNLALITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFGDSLYLWEMMWALEYDPDFFSMYEETDSANEKAEGSKGKPKSMHQYGKFERENMKNKIKNGEAPLPISVFLVASVLKEKSSKLLTEARGLDDVVKILNDITGNLDAKKACTGAMKLHRKYLKKAKKV* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0534 450 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 275 443 IPR035969 -
Vvi19g0534 450 MobiDBLite consensus disorder prediction 147 175 - -
Vvi19g0534 450 SMART tbc_4 60 360 IPR000195 -
Vvi19g0534 450 Gene3D - 273 450 - -
Vvi19g0534 450 MobiDBLite consensus disorder prediction 156 172 - -
Vvi19g0534 450 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 41 297 IPR035969 -
Vvi19g0534 450 ProSiteProfiles TBC/rab GAP domain profile. 63 337 IPR000195 -
Vvi19g0534 450 FunFam TBC1 domain family member 15-like 168 267 - -
Vvi19g0534 450 Pfam Rab-GTPase-TBC domain 170 335 IPR000195 -
Vvi19g0534 450 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 34 421 - -
Vvi19g0534 450 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 166 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0534 Vvi-Chr19 5996118 6010870 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0534 - - vvi:100250247 890.952