Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0531 ATGGCAACCCTCACCTCCTCCATCTGCTCCAAGCCTAAAGCCTCCGTTTTCGATCCACACAAGTCCTCTTTCCATGGCGTCCCTATCGCCACCCAGGCCCGCCTGAGCCCGGTGAAATCCACGCCGGTGAATCTCGCCGTTACAGCCGCAGCGATGCCCTACGACCTCCGGTCGTTCAAGTTCGAACCCATCAAGGAGTCGATCGTCTCTCGCGAGATGACCCGCCGGTACATGATGGACATGATCACCTACGCGGACACTGACGTCGTTGTCGTCGGCGCCGGCTCTGCTGGGCTGTCCTGCGCCTACGAGCTCAGCAAGAACCCCTCCGTACAGGTGGCGATCATTGAGCAATCCGTCAGCCCCGGCGGCGGCGCGTGGCTCGGGGGCCAGCTCTTCTCCTCCATGGTGGTCCGCAAGCCAGCACACCGCTTTCTCGATGAGCTTGGCCTAGAGTACGACGAGCAAGACAACTACGTGGTGATAAAGCACGCGGCTCTCTTCACATCCACCATCATGAGCAAGCTCTTGGCGAGGCCCAACGTGAAGCTCTTCAACGCGGTGGCAGCCGAGGATCTGATTATAAAGGAAGGGAAAGTCGGCGGGGTGGTGACCAACTGGGCTCTGGTGTCGATGAACCACGACACACAGTCGTGTATGGACCCGAACGTGATGGAGGCGAAGGTGGTGGTGAGCTCATGTGGACACGACGGGCCGTTCGGAGCCACTGGAGTGAAGAGGCTGAGGAGCGTTGGAATGATAGACAGCGTTCCGGGAATGAAGGCGCTAGACATGAACACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTGGCCTTGAAGTCTCTGGGGCTGCCCAACGCTCTGGACGGCACATACATCGGAAACCTCCATCCCGAGCTGGTCTTGGCCGCTGCCGCCGATGCTGCTGAGATTGCTGAGGCTTAA 1062 0.5932 MATLTSSICSKPKASVFDPHKSSFHGVPIATQARLSPVKSTPVNLAVTAAAMPYDLRSFKFEPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSSMVVRKPAHRFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKEGKVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLRSVGMIDSVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKSLGLPNALDGTYIGNLHPELVLAAAADAAEIAEA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0531 353 SUPERFAMILY FAD/NAD(P)-binding domain 41 315 IPR036188 -
Vvi19g0531 353 Gene3D - 55 85 - -
Vvi19g0531 353 FunFam Thiamine thiazole synthase, chloroplastic 86 321 - -
Vvi19g0531 353 Pfam Thi4 family 70 303 - -
Vvi19g0531 353 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 5 330 IPR027495 GO:0009228
Vvi19g0531 353 Gene3D - 86 330 IPR036188 -
Vvi19g0531 353 PANTHER THIAMINE THIAZOLE SYNTHASE 44 353 - -
Vvi19g0531 353 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 66 321 IPR002922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0531 Vvi-Chr19 5983381 5984788 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0531 K03146 - vvi:100260728 665.996