Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0510 ATGGCCGATGCTTTGTTTTCAGTGGTTTTCGACATCTTGATCCAGCGCGTGCATCAGGCGATAGCCGTAGCCGTAGATCACGATGAGATCAGTAACCTGAACTTACATGTCGGCTTTGACTCAAGTCACAGGAAGAACACAGCCCTTCATATTGCTGCAAGAGTAGGGAACAAGAAAATGGTGGAAGCGTTACTCAGCGAGGGTACACCAGCTTCGCTTCTCACTGAGAACTCTAAACATGAAACCCCACTTCACATTGCAGCTAGATCTGGCCATGTTCATGTGGTAAAATTTCTTATTGATTGGGCGACCCAGTCCACAGATGTCGAAGCTGGAGGGATACAACAGGTACTGAGAATGAGAAACATGGAAGGCAACACGCCATTACATGAAGCTGTTAGAAATGGTCACCATTCTACTGTGCTTGTATTGGTGGAAGCAAATGACTCAGATCTGCTTGTTTCACTCAACAATGCTGGGGAGTCTCCACTTTTTATGGCTGTTGATGTGAGGGCAAGTGAAATTGTGAAAACTATCTTACCAAATTCAAATCCCTATTCTCTTCTCCATAGAAGTTCCGACGGCCAGACGATTCTCCATAGGGCCATTCTGAGAGCTGATTTGAAGACTATGAAAATTATAATCCAACATATGCCGGAATTGGTGAATGAAAAAGATAGCTGCGGAAGAAGTCCTCTTCACTATGCTGCAGCCTCCGGTGCCTTAGCCTTGGTCGATCATTTACTACAACTAAAACCTTCCAATGGATCTTTCCTCGATAACAATTTAGCAACACCGGCTCATATGGCTGCAGAAAATGGGCATCTGAATGTATTGAAATTGTTTGTCAAGCGCTGCCGCTATTGGGTCGAATTACTCAACAATCACCACCAAAATATCCTTCATGTAGCAGCCCAAAATGGACATCTTAAAGTTGTTCGATATATTCAAAATATGTTCATGGTGAATGATCTATTGAATGAGACCGATGAGGATGGAAACACCCCTTTGCATCTTGCAGCAGCAAAATTGCACAGCAGCATCGTAAGTACTCTTGTCCAAACAGGAAATATGGATACTACGGCAATCAATAAAAAAGGTGAAACAGTCCTGGATATTGCTAGGAAATTTCAGCTTGTTTCACCAAGTAATGAAGGAAATGAAGGCACGGATGGGAATCAAGCCCAAGCAACTCCAAACAAGACTGGTTGTGCCGGTGATGAAAAGATAGAAGCAAAAAAGCAACGGACCATAGAAATTCTGAAGGCGGCAAGTGCAAAGCAAGCTAAAAAGTTAGAGGGAATCCTAGAACAAGAAGATCTTATAATAGAATCAATACGGGACAAGAGGCGTAAAGAAATGGCTGGCACCCTCATAGTAATGGCAACATTAGTTGCAACAGTCACATTTACAGCGGCATTCACCCTTCCAGGGGGCATCCAAAGTGAAGGTCCACATCAAGGGATGGCAGTGCTAACAAGGAAAGCAGCATTCAAAGCTTTTATTGTCACTGATACAGTAGCTATGACTACGTCCATGACTGCTGCAGTGATTCTTTTCACATCATCTTGGAATGATGAGAAAAATAAATGGAATCTGCACTTTATTGCCTTGCAGTTGTTATGGATGTCACTTGCCTCAATGGGACTGGCATTCCTTACTGGACTGTTCACTGTTCTATCACACTCAATGGAGCTTGCTATCATGGTTTGCCAAGTACTTCCCGGGGGAAAGCAGTGA 1740 0.4345 MADALFSVVFDILIQRVHQAIAVAVDHDEISNLNLHVGFDSSHRKNTALHIAARVGNKKMVEALLSEGTPASLLTENSKHETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRADLKTMKIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLKPSNGSFLDNNLATPAHMAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKVVRYIQNMFMVNDLLNETDEDGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAINKKGETVLDIARKFQLVSPSNEGNEGTDGNQAQATPNKTGCAGDEKIEAKKQRTIEILKAASAKQAKKLEGILEQEDLIIESIRDKRRKEMAGTLIVMATLVATVTFTAAFTLPGGIQSEGPHQGMAVLTRKAAFKAFIVTDTVAMTTSMTAAVILFTSSWNDEKNKWNLHFIALQLLWMSLASMGLAFLTGLFTVLSHSMELAIMVCQVLPGGKQ* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat region circular profile. 332 356 - -
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat profile. 332 356 IPR002110 GO:0005515
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat region circular profile. 124 148 - -
Vvi19g0510 579 MobiDBLite consensus disorder prediction 382 405 - -
Vvi19g0510 579 Pfam Domain of unknown function 449 558 IPR026961 -
Vvi19g0510 579 Gene3D - 15 182 IPR036770 -
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat region circular profile. 228 250 - -
Vvi19g0510 579 FunFam Ankyrin repeat family protein 289 383 - -
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat profile. 79 101 IPR002110 GO:0005515
Vvi19g0510 579 SUPERFAMILY Ankyrin repeat 43 377 IPR036770 -
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat profile. 228 250 IPR002110 GO:0005515
Vvi19g0510 579 Pfam Ankyrin repeat 124 152 IPR002110 GO:0005515
Vvi19g0510 579 Gene3D - 286 380 IPR036770 -
Vvi19g0510 579 Gene3D - 183 285 IPR036770 -
Vvi19g0510 579 SMART ANK_2a 194 224 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 79 111 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 262 292 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 332 362 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 296 327 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 159 187 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 124 154 IPR002110 GO:0005515
Vvi19g0510 579 SMART ANK_2a 228 260 IPR002110 GO:0005515
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat profile. 124 148 IPR002110 GO:0005515
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat region circular profile. 79 101 - -
Vvi19g0510 579 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 40 147 - -
Vvi19g0510 579 MobiDBLite consensus disorder prediction 382 401 - -
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat region circular profile. 44 68 - -
Vvi19g0510 579 Pfam Ankyrin repeats (many copies) 300 352 IPR002110 GO:0005515
Vvi19g0510 579 Pfam Ankyrin repeats (3 copies) 165 250 IPR002110 GO:0005515
Vvi19g0510 579 Pfam Ankyrin repeats (3 copies) 22 102 IPR002110 GO:0005515
Vvi19g0510 579 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0510 Vvi-Chr19 5716035 5719590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0510 82 562 Miscellaneous Gene Families AT1G34050 23.265 6.20e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0510 - - vvi:104877544 1088.17