Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0508 ATGGCAGCTCCTGTCCCCCCAGGGGCACCTAGAGCCACGAATACACCGCCACCACCACCTAATTACAATCCTAATTATCAAAGAACGCCTGATTCGTTAGCTGAAAATATGCAAAACCTGCAAATTAATCGGCCACCTTCTGTGCCCAATTCTACCCCTAGACCTCCTCCCTCTTATATTCAATCCCCACCTTCCCATTCATCAGCCCCTTATTCAGCTCCTCAGCACTCTGCCCCTTTTCCTAGAGGGGCGCCTGTTTCTAGGCCCGGGCCATCTCCAGGGCCACAGTCAGGTGTTCTGGCAAGGCCAGGAATGGCTCCATCTGGACCTCCACAATCCACATTCCCTCCGAATATGGCTCCAGGAAGGCCCTCTGGTTATCCTATCAGTCAGGCTCTGCCCTTTGGGTCGAGACCGTCTACTGGGTCCTTTCCCTCTCCTATGGGTGGTCAAGTTACCACCTCTTCTGGGGCACCTCCCAGCGCATTCGCTTCCTCTTCTGCCGCACCTCCTAGTGCATTCCCAGCTTCTGGTTTCTCAGCTGGCCCAGTTATTCCCCCGGTGGCTGCCCGACCTGGTGTGTTTGCATCTTCTCCTTTGTCCACAGGTCCGATAATTCCCCCTTCAAGTGCACCTGGTGGGCCCACTAGTAATGGGCCACCTATGTTTGCATCAGCAGCATTGCAAGGTGGACCTCGGTATCCCTCGGCTGACAATACAATGCAAACACCAGTTGGGCATCCCCCTACAATGATGTCAACTCAGGCACCTTCCCAGCCTCCAACCATGCGAACTCTCCTCGGAAGTACAGCTCCCAATGTTCCACCAGGTCCTCCAGTGCAAACAGCCCCAACAGCCATGCCATTTTCAGCTGCACCTCAAGGTGTGCCACCGCCTTCTGGTTCTCCATATGGCCTGCAGACATGGCCAATGCAACCACGGCAGGTGGCTCCACCACCAACAATTCCTGGTTCTGTGCAACCACCTAGAATGTTTGGAATGCCACCACCACCGCCAAATCAATCTATGGCTGCTATGCCACCTGCTATGAGTCAAACTGGAGCACCTTTGGCAGGTCCATCAAAGATTGATCCTAATCAAATTCCTCGGCCCATTCCAAATACCTCTGTGATTCTGCATGAAACTCGTCAGGGCAATCAGGCTAACCCTCCTCCGCCCGCCACAAGTGATTACATTGTTAGGGATACTGGGAATTGCAGTCCACGATACATGAGGTGCACCATCAATCAGATCCCATGCACTGCTGATCTTTTGACAACATCAGGAATGCAGTTAGCCTTGTTGGTCCAACCTTTGGCCCTTCCTCATCCATCTGAGGAGCCCATCCAAGTTGTGGATTTTGGAGAAAGTGGTCCTGTTCGATGCTCCCGTTGCAAAGGTTACATTAATCCCTTCATGAAGTTTATTGATCAGGGAAGGCGTTTCATCTGTAACTTATGTGGATTTACTGATGAAACACCTCGTGACTACCATTGCAATTTGGGGCCAGATGGCAGGCGTAGAGATGCTGAGGAAAGGCCTGAGCTATGTAGAGGAACAGTGGAATTTGTTGCTTCAAAGGAATACATGGTGCGTGAGCCAATGCCTGCTGTGTTTTTCTTTCTGATCGATGTATCAATGAATGCAATACAGACTGGTGCAACTGCAGCAGCTTGCAGTGCAATCACTCAAGTTATCACTGATCTTCCTGAAGGTCCTCGAACAATGGTGGGAATAGCAACATTTGATTCTACAATCCATTTTTATAATCTGAAACGTGCATTACAGCAGCCTCTAATGCTCATTGTTCCTGATGTACAAGATGTTTACACTCCCCTCCAGACTGATGTAATTGTTCAGCTTTCCGAGTGTCGTCAACATTTAGAGCTGTTACTGGAAAACATACCAACCATGTTTCAGAATAATAGAACTGCTGAATCAGCCTTCGGTGCAGCAATCCAGGCTGCTTTCTTAGCGATGAAGAGTACTGGAGGAAAACTTCTGGTGTTTCAGTCAGTCTTGCCTTCAGTTGGCATCGGAGCCCTTTCTGCCAGAGAGGCTGAAGGAAGAACTAATATCACTGCAGGGGAGAAGGAGGCCCATAAATTACTCCAACCAGCAGACAAAACTCTGAAAACAATGGCAATTGAATTTGCTGAGTATCAGGTCTGTGTTGATGTTTTTATTACTACCCAAACCTATGTAGATATTGCATCTATTGCTGTCATCCCAAGAACTACAGGAGGACAGGTGTATTATTATTACCCCTTCTCAGCCCTTTCTGATCCTGCTAAGCTTTACAATGACCTTAGATGGAACATCACAAAGCCCCAAGGTTTTGAGGCAGTGATGCGTGTCAGATGCAGCCAGGGTCTTCAAGTTCAAGAGTACTCTGGAAACTTTTGCAGACGCATTCCAACAGATGTTGACTTACCTGGGATTGACTGTGACAAAGCTATCATGGTAACATTAAAACATGACGATAAGTTGCAGGATGGCTCCGAATGTGCTTTTCAGTGTGCCCTTCTTTACACCACTGTTTATGGCCAGAGAAGAATTCGAGTTACTACTCTCTCTCTACCATGTACAAGTATGCTAAGTAATTTGTTCCGCTCAGCCGACTTGGATACTCAATTTGCATGTTTTCTGAAGCAAGCGGCAAGTGAAATTCCTTCAACACCACTCTCACAAGTTAGGGAGCAAGTGACGAACCTTTGCATTAACATTCTGCATTCATATCGTAAATTTTGTGCAACAGTATCATCATCTGGACAACTAATTCTTCCTGAGGCACTTAAACTTCTGCCTTTATACACCCTTGCATTGATCAAAAGTATTGGACTGCGAACTGATGGGAGAATAGATGATCGGTCATTTTGGATCAATTATGTTTCCCCACTTTCTACTCCTCTGGCAATACCTCTGGTGTACCCGAGGATGATGGCTATCCATGACCTTAATTCACATGAAGGGGACAGGCCTCTTATTCCTCCTACAATTCCACTTTCCAGTGAGCATGTTAGCGATGATGGAATCTATCTACTGGAGAATGGTGATGATGGTTTGATTTATATTGGGAATTCGGTGAATCCAGATATCATGCGACAACTGTTTGGCATTTCTTCGGTTGACGTAATTCCTAGTCAGTTTGTGCTGCAGCAGTATGACAATCCCTTGTCAAAGAAACTAAATGAACTGGTAAATGAGATAAGGCGCCAAAGATGTTCATACCTCCGCATAAAATTATGCAGAAAAGGAGATGCATCAGGGATGCTCTTCTTCTCATTTATGGTCGAAGACAAGACTGCAATTGGACTCTCCTATGTTGAATTTCTAGTACATATCCATCGGCAAATCCAGATCAAAATGTCTTGA 3375 0.469 MAAPVPPGAPRATNTPPPPPNYNPNYQRTPDSLAENMQNLQINRPPSVPNSTPRPPPSYIQSPPSHSSAPYSAPQHSAPFPRGAPVSRPGPSPGPQSGVLARPGMAPSGPPQSTFPPNMAPGRPSGYPISQALPFGSRPSTGSFPSPMGGQVTTSSGAPPSAFASSSAAPPSAFPASGFSAGPVIPPVAARPGVFASSPLSTGPIIPPSSAPGGPTSNGPPMFASAALQGGPRYPSADNTMQTPVGHPPTMMSTQAPSQPPTMRTLLGSTAPNVPPGPPVQTAPTAMPFSAAPQGVPPPSGSPYGLQTWPMQPRQVAPPPTIPGSVQPPRMFGMPPPPPNQSMAAMPPAMSQTGAPLAGPSKIDPNQIPRPIPNTSVILHETRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQLALLVQPLALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETPRDYHCNLGPDGRRRDAEERPELCRGTVEFVASKEYMVREPMPAVFFFLIDVSMNAIQTGATAAACSAITQVITDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVQLSECRQHLELLLENIPTMFQNNRTAESAFGAAIQAAFLAMKSTGGKLLVFQSVLPSVGIGALSAREAEGRTNITAGEKEAHKLLQPADKTLKTMAIEFAEYQVCVDVFITTQTYVDIASIAVIPRTTGGQVYYYYPFSALSDPAKLYNDLRWNITKPQGFEAVMRVRCSQGLQVQEYSGNFCRRIPTDVDLPGIDCDKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSMLSNLFRSADLDTQFACFLKQAASEIPSTPLSQVREQVTNLCINILHSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSIGLRTDGRIDDRSFWINYVSPLSTPLAIPLVYPRMMAIHDLNSHEGDRPLIPPTIPLSSEHVSDDGIYLLENGDDGLIYIGNSVNPDIMRQLFGISSVDVIPSQFVLQQYDNPLSKKLNELVNEIRRQRCSYLRIKLCRKGDASGMLFFSFMVEDKTAIGLSYVEFLVHIHRQIQIKMS* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0508 1124 Gene3D - 406 862 - -
Vvi19g0508 1124 MobiDBLite consensus disorder prediction 109 123 - -
Vvi19g0508 1124 Pfam Gelsolin repeat 996 1065 IPR007123 -
Vvi19g0508 1124 Pfam Sec23/Sec24 helical domain 874 969 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vvi19g0508 1124 PANTHER SEC24-RELATED PROTEIN 239 1119 - -
Vvi19g0508 1124 SUPERFAMILY Zn-finger domain of Sec23/24 446 532 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi19g0508 1124 MobiDBLite consensus disorder prediction 48 63 - -
Vvi19g0508 1124 MobiDBLite consensus disorder prediction 26 47 - -
Vvi19g0508 1124 MobiDBLite consensus disorder prediction 134 173 - -
Vvi19g0508 1124 Pfam Sec23/Sec24 beta-sandwich domain 779 862 IPR012990 -
Vvi19g0508 1124 CDD Sec24-like 534 778 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vvi19g0508 1124 MobiDBLite consensus disorder prediction 1 179 - -
Vvi19g0508 1124 SUPERFAMILY Helical domain of Sec23/24 874 977 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vvi19g0508 1124 Gene3D von Willebrand factor, type A domain 536 776 IPR036465 -
Vvi19g0508 1124 Pfam Sec23/Sec24 trunk domain 534 774 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vvi19g0508 1124 SUPERFAMILY beta-sandwich domain of Sec23/24 271 873 - -
Vvi19g0508 1124 SUPERFAMILY vWA-like 534 774 IPR036465 -
Vvi19g0508 1124 Gene3D - 401 518 - -
Vvi19g0508 1124 Gene3D Severin 978 1100 IPR029006 -
Vvi19g0508 1124 Gene3D Sec23/Sec24 helical domain 863 1119 - -
Vvi19g0508 1124 MobiDBLite consensus disorder prediction 1 25 - -
Vvi19g0508 1124 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 978 1120 IPR036180 -
Vvi19g0508 1124 Pfam Sec23/Sec24 zinc finger 459 497 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0508 Vvi-Chr19 5677263 5712392 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0508 K14007 - vvi:100265768 2062.34