Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0506 ATGGATCGACAGGCTCATGATTATGCTGCTGCTATGGCATTTGCTCAGCAGCAGCAACAAGCAGCTAATGTTCAACAGCAGCAACCTTTTGGGTTTCATCCACAACACCAACCGTTCCCTCCATCAGTGCATGGTCCTCCTTTTCTACCCCCTCATCCTTCTCTCCAACAGTATCCTTTTCATCGCCACATGCCACCACAATCACAGCAACTCCATCCCCATCCTCCACCACATCCCCACCTCCTTCATCTCCAGCAGCAACAGCAGCCTCCATCTGCTTTCCCTCCTCATTTACCCTCTCACCTTGTTCCTTCACCTTTTCATGGTCCTTATGAATCTGGCTCGCCCCCATCTGCCCCTCCTTCTGATCCTGAACTTCACAAGCGGATAGATAAGCTTGTTGAGTATGCTGCCAAGAATGGCCCAGAATTTGAAGTCATGATCCGTGAAAAACAACAAGACAACCCAGCATACAGTTTCCTCTTTGGTGGTGAGGGGCATAATTATTATCGATATAAGCTTTGGTTATCTACACGTTCCTCAGGTGGCCCCTTCAACTCTCCTTTCCCTCCCTCTTCTATACCTACGATGCATTCTCCTATGAATCCCATGATGAACCCATCTTTAAATGCTCCTCCAGCTGCTGCTGGGGCTTCGGCTTCAATGTTGGGCACGCCTCAAATGCATCAACAACCTTCATATCTACCATTTTATGACCAGCAGCAGCAGCAGCATCCTCAGCCTTTCCTAGGACATGGTCGACCAGATTTTGACCCCTCATCCAAATCTTTCAAAGGTCTGTCTGGACCACTTCCATCTGATGTTGCTATGGAGCTGAGTAATGTTCTGAACAATCTCACTGGTACCAAAGAGTCCATTAAAGGTGCCAAGATTTGGTTTATGCAGAGGTCTCCATTTGCACCAGCTTTGGCTGAGGCACTTAGAGATAGGGTCTTTGCTTTGGATGATTCTGAGAGACAATTGCATATAATTTACCTTGCCAATGACATTCTTTTTGACAGCTTGCAAAGGCGGATCAATCCACATGAACTTGATAATGAGGCCCTAGCATTTAAACCTGTCTTAGGTTCCATGCTTGCAAGGATTTACCACAACCCTCAAAACAAGGAGGAAAATCAATCACGATTACAGAAAATTCTACAGTTCTGGGCTTCCAAGGAAGTTTATGATCATGATACAATTTATGGGCTTGAGGGTGACATGATTGGTGGACCCCCAGGCAATTCTTTTTCAGGCCTTCTCAAGGAGTTATCTGCTGTTCCTGCGGATCCCTCAGCTGTTTCAGGATTGCCACAAACAGCACACCATAATGTACCACAGTGGCAGCCCGATAAGCCAAGTTCTATGCCAAGTTTACTAGAGCAAGAACAACCTGATAAACAAATGCCTTCCCTTGCAGCCATGCCGCCGTCCTTGGCTACACAGCAATTTCTTCCGAATGCAGTTCCTGCTGGTCCTTTCCTAGGATCAATGCCCATACCATCTTCTGTTCAACCAGCAAACCAACAACCTGCACTCCATTTGCCTACAGCCACTGGTCTTGGTGAAAAATTACCTCCATATCCTTTATTCCCACCTGGTCTTATTCCTGGAATGGTAAGAAAGATGCAGATTGGTAGTGGTGTGCCCTACTCCCCCATGAGCCCTTTGGACATCCCAACAGTTATACCTCTATCCAATGTATCACCATCTGAAATTCTTGAGAGAGTATCAAAATTCTTTAAAGAGATTGGAGAGGTCAATCCTTCTGAAGGACCGATGGAACCATCTGATTCAAAAGATGAAGACGATGAGTATGAAAGAGACCCTCCTGTTCGCAAGGGAGGAGCTTGCATTCCTCCCCCTCCTAACCTGCAGGTGGATCCTGAAACAGGGACGTATTCTGATGGAAGTGTAGAGCGGAAACCAGGATCCAGTGGCTCAGCACGGTTGGGACTTGGGGCCACAGCTAATCCAAATGAAGTGAGCCAATACGATGATGTTTACAGTTCTTATAGGAAACAGAGAAGCACCACCTACCATTCATCAATGAGTGCTAGAGTGGGTACAAGGTGA 2076 0.4668 MDRQAHDYAAAMAFAQQQQQAANVQQQQPFGFHPQHQPFPPSVHGPPFLPPHPSLQQYPFHRHMPPQSQQLHPHPPPHPHLLHLQQQQQPPSAFPPHLPSHLVPSPFHGPYESGSPPSAPPSDPELHKRIDKLVEYAAKNGPEFEVMIREKQQDNPAYSFLFGGEGHNYYRYKLWLSTRSSGGPFNSPFPPSSIPTMHSPMNPMMNPSLNAPPAAAGASASMLGTPQMHQQPSYLPFYDQQQQQHPQPFLGHGRPDFDPSSKSFKGLSGPLPSDVAMELSNVLNNLTGTKESIKGAKIWFMQRSPFAPALAEALRDRVFALDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSMLARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGDMIGGPPGNSFSGLLKELSAVPADPSAVSGLPQTAHHNVPQWQPDKPSSMPSLLEQEQPDKQMPSLAAMPPSLATQQFLPNAVPAGPFLGSMPIPSSVQPANQQPALHLPTATGLGEKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPMSPLDIPTVIPLSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDEDDEYERDPPVRKGGACIPPPPNLQVDPETGTYSDGSVERKPGSSGSARLGLGATANPNEVSQYDDVYSSYRKQRSTTYHSSMSARVGTR* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0506 691 MobiDBLite consensus disorder prediction 651 691 - -
Vvi19g0506 691 Gene3D - 276 410 IPR008942 -
Vvi19g0506 691 SMART 558neu5 278 409 IPR006569 -
Vvi19g0506 691 MobiDBLite consensus disorder prediction 431 467 - -
Vvi19g0506 691 MobiDBLite consensus disorder prediction 15 126 - -
Vvi19g0506 691 MobiDBLite consensus disorder prediction 628 642 - -
Vvi19g0506 691 MobiDBLite consensus disorder prediction 585 691 - -
Vvi19g0506 691 Pfam Surp module 130 175 IPR000061 GO:0003723|GO:0006396
Vvi19g0506 691 ProSiteProfiles SURP motif repeat profile. 129 173 IPR000061 GO:0003723|GO:0006396
Vvi19g0506 691 ProSiteProfiles CID domain profile. 271 412 IPR006569 -
Vvi19g0506 691 MobiDBLite consensus disorder prediction 241 265 - -
Vvi19g0506 691 SMART surpneu2 127 179 IPR000061 GO:0003723|GO:0006396
Vvi19g0506 691 SUPERFAMILY Surp module (SWAP domain) 106 175 IPR035967 GO:0003723|GO:0006396
Vvi19g0506 691 Gene3D Surp module 115 182 IPR035967 GO:0003723|GO:0006396
Vvi19g0506 691 PANTHER SR-RELATED CTD ASSOCIATED FACTOR 6 602 688 IPR039037 GO:0006874
Vvi19g0506 691 MobiDBLite consensus disorder prediction 437 465 - -
Vvi19g0506 691 MobiDBLite consensus disorder prediction 15 33 - -
Vvi19g0506 691 MobiDBLite consensus disorder prediction 34 54 - -
Vvi19g0506 691 Pfam CID domain 278 402 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0506 Vvi-Chr19 5637233 5640466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0506 - - vvi:100255482 1222.61