Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0504 ATGGAGTCAAGCAGGATATCTCATCCTTCACTTGTATCTAAAATTGATATCCATGAATGGTTAGTTTTTGATCAAAAGAAAAAAAAGGAAAGCAAAGCACATGAAAATTATGTCTTAGCACTTTGTGAAAGTGGCCGGAAGGAGGAGCTTTTGAAAGTGTTAGAAATTATAGACATAACGAAAGTTTCATCAGTGGACTATGTGGCAAGTATCTTTAAATCTTTGGGGAGGCTGTCTCTGGCGTCCTTTATGGAGAAGTTTGTTTCGGCATTCAAAGCTTGCGATTATGGAGCAGAAGAGATCTCAGATTTCATCTTTTATTATGCTAGTAATATGCCAAATTTAGCGGTTGAAGATGTTATTTTAAAATTCAAAGACTTGCATGCGCAACTGGTTGTGACACCTTCATCCACGTCATATAATAAGCTTGTTACATATTGTTGCGATTCCTTCAAGGTGCATGCAGCTCTTGATATAGTTGACCAAATGTGTGAAGCAGGTTTAACCTTATCAATAGAGATGTTCCATTCTATACTACGTGCAAGTGAGGAGAGCTTTGAGTTTAACTTGGTCCATCGAATCTATTCAGTGATCTGTCATCAGAGCTTGGAGCCAAATTGTGAAACCTTCAGAATCATGATAAATTTGCATGTGAAAATGAAAGATTTTGATGGTGCATATGACCTTCTCAAAGATATGAAGAAAATAAATTTGACACCTACAGCTGGCATTTACAATGCAATAATGGGCGGGTACTTTCGGGAGAAAAACATTTATGGTGGTTTAATGGTCCTGAAGCAAATGGGAGATGCAGATGTAAAACCAGATTCTCAGACCTTCTGCTATCTACTAAACAACTGTGAATGTGAGGAGGATATTATTAAGTATTATGAAAAATTGAAGTGTGCTGGAGTTCAAGTGACGAAGCATGTTTTCATGGCACTTATAAATGCATATGCAAGTTGTGGACAGTTTGAGAAGGCAAAACAGGTAGTCTTGGATAAAGGAGTGCCAATTAAGAGCTTGAATGAAATTAAAAGTGTGCTTGTCTCAGCTCTTGCATTACATGGGCAAATCTCTGATGCCTTTGACATATATGAAGAAATAAAAAATTCTGGATTCAATCTTGAGCCTAAAGCCATTATACTTCTTATTGAATACCACCAATCTGAAGGAGACTTGACTAGATTGCTTCAGCTACTTGAGGAATTGAATGATCCTGATTATCGTGTTGAGGGTAGCTGCAGGATCCTTTTATATTGTGTTAGATACAACCATTTGAGTTCTGCCATTGATTTACTCAAGCAACTCAAGGACACATTCCATGATAATGAATTGGCTATGGAAGCAATTCTTGATGAGGTATTTTCCCTAATTGCGGAGATAGAGCCTGTGAATTTGAAGATTGGCCTGGATTTACTTACTGCCATAAAGGAAGAGCTTGGCCTTAGGCCTTCACGAAAAAGTCTTGATTTTCTCCTTGCTGCTTGTGTTAATGGTAAAGATTTGGATAATTCTCGTTTGATTTGGAGAGAGTATCAGACTGCTGGCTTTACTCACAATGTTTTAAGTTTCTTAAGGATGTATCAGGCCTGTTTGGCTTGTGGAGACCACAAGTCTGCTGCAAACATACTACATAAAATACCAAAAGATGATCCCCATGTTTGCTGTGTCATCAAGGCATGTCAAACAACTTATGCGAAGTCCTCTGTAAAGGGCAAGAAGAAGAAGGAGGGGGATGCTTCAAATGATCTGAAGATTTGA 1764 0.3804 MESSRISHPSLVSKIDIHEWLVFDQKKKKESKAHENYVLALCESGRKEELLKVLEIIDITKVSSVDYVASIFKSLGRLSLASFMEKFVSAFKACDYGAEEISDFIFYYASNMPNLAVEDVILKFKDLHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQMCEAGLTLSIEMFHSILRASEESFEFNLVHRIYSVICHQSLEPNCETFRIMINLHVKMKDFDGAYDLLKDMKKINLTPTAGIYNAIMGGYFREKNIYGGLMVLKQMGDADVKPDSQTFCYLLNNCECEEDIIKYYEKLKCAGVQVTKHVFMALINAYASCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFDIYEEIKNSGFNLEPKAIILLIEYHQSEGDLTRLLQLLEELNDPDYRVEGSCRILLYCVRYNHLSSAIDLLKQLKDTFHDNELAMEAILDEVFSLIAEIEPVNLKIGLDLLTAIKEELGLRPSRKSLDFLLAACVNGKDLDNSRLIWREYQTAGFTHNVLSFLRMYQACLACGDHKSAANILHKIPKDDPHVCCVIKACQTTYAKSSVKGKKKKEGDASNDLKI* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0504 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Vvi19g0504 587 NCBIfam pentatricopeptide repeat 209 235 IPR002885 -
Vvi19g0504 587 NCBIfam pentatricopeptide repeat 139 170 IPR002885 -
Vvi19g0504 587 NCBIfam pentatricopeptide repeat 244 277 IPR002885 -
Vvi19g0504 587 PANTHER OS02G0132600 PROTEIN 22 578 - -
Vvi19g0504 587 Pfam PPR repeat 312 331 IPR002885 -
Vvi19g0504 587 Pfam PPR repeat 348 374 IPR002885 -
Vvi19g0504 587 Gene3D Tetratricopeptide repeat domain 183 290 IPR011990 GO:0005515
Vvi19g0504 587 Pfam Pentacotripeptide-repeat region of PRORP 138 287 IPR033443 -
Vvi19g0504 587 Gene3D Tetratricopeptide repeat domain 291 415 IPR011990 GO:0005515
Vvi19g0504 587 Gene3D Tetratricopeptide repeat domain 416 585 IPR011990 GO:0005515
Vvi19g0504 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0504 133 408 Miscellaneous Gene Families AT4G11690 20.979 1.26e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0504 - - vvi:100250302 1085.86