Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0502 ATGGCGAAGATCACACTTGGGTGCGAACCAGTGGTGGGTTCGTTGACGCCGTCGAAGAAGAGAGATTACAGAGTCACCAATCGTCTTCAGGAGGGCAAACGTCCCATATACGCCGTCGCTTTCAACTTCATCGACTCTCGTTACTTCAATGTCTTCGCTACTGTCGGCGGCAATCGAGTAACTGTTTACCAATGTCTTGAAGGGGGCGTCATTGCTGTCTTGCAGTCTTACATTGATGAAGATAAGGATGAGTCTTTTTACACTTTGAGTTGGGCATGCAGTATTGATGGCATCCCATTCTTGGTGGCTGGAGGAATCAATGGTATAATTCGTATCATTGATACTGGCAATGAGAAGATACACAAGAGTTTTGTTGGCCATGGGGACTCGATTAATGAAATCAGGACTCAGGCACTGAGACCATCACTTGTGGTGTCTGCAAGCAAAGATGAGTCAGTGCGGTTATGGAATGTTCACACGGGAATATGCATTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCTGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCTCCTGGCGAGGGTTCCGTCGACATTCTTCAGAAATATCCTGTACCAGAGTGTGATATTTGGTTTATCAAATTCTCCTGTGATTTCCATTATAATGCAGCGGCTATAGGGAATAGAGAAGGGAAGATCTATGTCTGGGAACTGCAGTCCAGCCCCCCTGTTCTCATTGCAAGGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTTTGACGGAAGCACCATTCTAAGCTGCTGTGAGGATGGGACAATCTGGCGATGGGATGCTGTTGCAACACCCTGA 1113 0.4474 MAKITLGCEPVVGSLTPSKKRDYRVTNRLQEGKRPIYAVAFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTLSWACSIDGIPFLVAGGINGIIRIIDTGNEKIHKSFVGHGDSINEIRTQALRPSLVVSASKDESVRLWNVHTGICILIFSGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKTKEQSPGEGSVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIYVWELQSSPPVLIARLSHIQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDAVATP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0502 370 SUPERFAMILY WD40 repeat-like 26 365 IPR036322 GO:0005515
Vvi19g0502 370 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Vvi19g0502 370 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Vvi19g0502 370 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Vvi19g0502 370 SMART WD40_4 160 203 IPR001680 GO:0005515
Vvi19g0502 370 SMART WD40_4 82 114 IPR001680 GO:0005515
Vvi19g0502 370 SMART WD40_4 278 319 IPR001680 GO:0005515
Vvi19g0502 370 SMART WD40_4 117 157 IPR001680 GO:0005515
Vvi19g0502 370 SMART WD40_4 229 266 IPR001680 GO:0005515
Vvi19g0502 370 SMART WD40_4 324 365 IPR001680 GO:0005515
Vvi19g0502 370 FunFam polycomb group protein FIE1 19 368 - -
Vvi19g0502 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515
Vvi19g0502 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Vvi19g0502 370 Pfam WD domain, G-beta repeat 163 203 IPR001680 GO:0005515
Vvi19g0502 370 Pfam WD domain, G-beta repeat 122 157 IPR001680 GO:0005515
Vvi19g0502 370 PANTHER POLYCOMB PROTEIN 5 367 - -
Vvi19g0502 370 Gene3D - 19 368 IPR015943 GO:0005515
Vvi19g0502 370 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Vvi19g0502 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Vvi19g0502 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0502 100 207 Miscellaneous Gene Families AT5G08390 27.523 5.14e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0502 K11462 - vvi:100246903 768.074