Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0500 ATGATAAGAAGTCTAGGGTTTGGAGAATCACAAGTTTTCCATTTCCTTCTGGGTGTGCTTGTTTCTCTCTTTCTCTGCGTTTTGGGGATGAGGAATAATGATGGCCCTAAGCCTCATTCGGGTCGGACCAACGGGTTCATTCCCACTTCGTTTCGGGCGATTTCGGGTTATTTGAGGATCGTGTCGTCCGGTGCTTCCACTGTTGCGTCGACGGTGCGTTCGGCAGCGTCTTCAATTGTGGATAGAGATGATGATGCCAGCCATGATCAGGTGCAATGGGCTGGGTTTGACAAGTTAGAATGTGATGGAAACATCAATCGGCAAGTTCTCTTGCTTGGATATCGATCTGGATTCCAGGTCTGGGATGTTGAAGAAGCAGATAATGTGCGTGATCTAGTGTCCAGACATGATGGTCCTGTTTCATTTTTGCAAATGCTACCAAACCCAGTTGCATCAAAGGGATCCAAAGACAAGTTTGCAGACAGCCGCCCATTACTGGTAGTTTGTTCAGATGGATCTCTTTCTGGAGGTGGTAACATACAGGATGGATTTGGCACTCCTTACAAGGAGGGCATCCCAAATAGCCATGATACAGTGAATGGCAGTGCTATGCCTACTGTAGTTCGTTTTTATTCCTTGAAATCTCAGTCTTTCGTGCATTTTCTGAAGTTCAGGTCAGTAGTTTATTCTGTAAGATGCAGCTCCCGAGTGGTTGCTATTTCTCAAGCAGCTCAGATACACTGTTTTGATGTTGCAACATTGGAGAGGGAATATACTATTCTCACAAATCCGATAGTAACTGGTTCTCTTAGCTCAGGGAGTATAGGCTATGGACCTCTTGCAGTGGGTCCCAGGTGGCTGGCTTATAGTGGCAGTCCTGTTGTAGTCTCAAATTATGGGCGCGTTAGTCCTCAACATTTAACAACTTCTGGAAGTTTCTCTGGTTCTGCTTCAAATGGGAGTCTGGTTGCACACTATGCGAAAGAATCGAGCAAGCAACTTGCAGCTGGAATTGTGTCCTTAGGAGACATTGGATATAAGAAGCTGTCCAGATACTGCTCTGAGCTCCTACCTGATTCCAATAATTTGCCACATTCTGGGAGTCCTGGTCCTGGGTGGAAGGGAAATGGAGCTGTCAATGCCCATTTTCCAGATGCAGACAATGTTGGAATGGTTATTGTGAGAGATATTATCGCTAAATCTGTTATTACTCAGTTTAAAGCACATAAAAGTCCTATTTCAGCATTATGCTTTGATCCTAGTGGGACCCTTTTGGTGACAGCCTCGGTTCAAGGTCACAACATAAATGTCTTCCGAATAATGCCCGGGGTAGCTGGAAGTTCATCTGGATCAGATACTTGTGCATCTTATGCACATCTTTACAGGCTGCAACGAGGTTTCACAAATGCAGTCATACAGGACATCAGTTTCAGTGATGACAGCAATTGGATTATGATAAGCTCCTCAAGGGGGACAAGCCATCTATTTGCTATATCCCCTTCAGGAGGATCAGTAAATCTTCAGCCTTCAGACTCTTCTCCTACTGCTAAAAATAGTGGATTGGGTGTACCGACTAAGCCAGCTGTTCGCTGGCCACCTAATTCTGGGCTACAAATGCTTAGTCAACAAAACTTTTGTGCATCTGGTCCCCCGGTTACTCTTTCTGTTGTTAGCAGAATAAGAAGTGGAAATAATGGATGGAGAGGCACTGTAACTGGTGCTGCAGCAGCTGCAGCAGCTGCAACCGGAAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCGTCTTTCCACAACTGCAAAGCTAATGATTTATTTTCCAATAGCAGCTCCTTGAAGGAAAAATACCACCTTCTGGTTTTCTCTCCTTCCGGTTGTGTAATACAATACGCTTTGCGAATTTCAACTGGAATAGATTCTACCACTGTTGTTTCTGGATTGTCCACTGGATATGAATCAACTCCTGATGGTGATGGGAGATTAGTGGTTGAGGCTGTCCAGAAATGGAATGTTTGTCAAAAACAACATCGAAGAGAGCGTGAAGATAATACTGACATATATGGTGAAAATGGAAATACAGATAGCAGCAAAATATTTCCTGAAGGAATTAAAAAGGAAAATGCTTTCCACCCAGAGACTAGGAGTGGAGTTTCAAAAAGTAAGATCAGTCCTGAGGAAAGGCATCATTTGTATATTTCAGAAGCAGAACTGCAGATGCATCAAGCTCAAAACCCATTGTGGGCAAAACCTGAGATATACTTCCAGACGATGATGGTTGATGGATTGGAAGAAAATGTTTTGGGAGGGGAAATTGAGGTCGAAAGGTTTCCAACACGCATGATTGAAGCAAGGTCAAAAGATCTAGTTCCAGTTTTTGACTATCTTCAAACTCCCAAATTTCAAAAAGCAAGGCTATCTCGCAGGAGCAGCTCTGGCTCTCTTGACTTAGTAGCTGATGGTGGTGTAGCAGTAGCTGAACATCCCACTGGTATCGAAGAAACTGGTTGGAACGGTCTTCGGATGCCAGAAACAGACAAGGGCTTTGTAAATAGCAATGACAGGCCTAAAACAAAGACGCTCAAGACTGTAAATAATAGAGAGAGCTTTAAGATGGAGGCTCAACACAAGTTTGTAAATAATAACAAAGATGGCCTGAACGTGGAGAATCAATTAGAAGATGCGGATGATGAGTTTGATTAG 2697 0.4383 MIRSLGFGESQVFHFLLGVLVSLFLCVLGMRNNDGPKPHSGRTNGFIPTSFRAISGYLRIVSSGASTVASTVRSAASSIVDRDDDASHDQVQWAGFDKLECDGNINRQVLLLGYRSGFQVWDVEEADNVRDLVSRHDGPVSFLQMLPNPVASKGSKDKFADSRPLLVVCSDGSLSGGGNIQDGFGTPYKEGIPNSHDTVNGSAMPTVVRFYSLKSQSFVHFLKFRSVVYSVRCSSRVVAISQAAQIHCFDVATLEREYTILTNPIVTGSLSSGSIGYGPLAVGPRWLAYSGSPVVVSNYGRVSPQHLTTSGSFSGSASNGSLVAHYAKESSKQLAAGIVSLGDIGYKKLSRYCSELLPDSNNLPHSGSPGPGWKGNGAVNAHFPDADNVGMVIVRDIIAKSVITQFKAHKSPISALCFDPSGTLLVTASVQGHNINVFRIMPGVAGSSSGSDTCASYAHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAISPSGGSVNLQPSDSSPTAKNSGLGVPTKPAVRWPPNSGLQMLSQQNFCASGPPVTLSVVSRIRSGNNGWRGTVTGAAAAAAAATGRMSSLSGAIASSFHNCKANDLFSNSSSLKEKYHLLVFSPSGCVIQYALRISTGIDSTTVVSGLSTGYESTPDGDGRLVVEAVQKWNVCQKQHRREREDNTDIYGENGNTDSSKIFPEGIKKENAFHPETRSGVSKSKISPEERHHLYISEAELQMHQAQNPLWAKPEIYFQTMMVDGLEENVLGGEIEVERFPTRMIEARSKDLVPVFDYLQTPKFQKARLSRRSSSGSLDLVADGGVAVAEHPTGIEETGWNGLRMPETDKGFVNSNDRPKTKTLKTVNNRESFKMEAQHKFVNNNKDGLNVENQLEDADDEFD* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0500 898 MobiDBLite consensus disorder prediction 679 698 - -
Vvi19g0500 898 Pfam Breast carcinoma amplified sequence 3 549 789 IPR022175 -
Vvi19g0500 898 SUPERFAMILY WD40 repeat-like 106 499 IPR036322 GO:0005515
Vvi19g0500 898 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 42 870 IPR045142 GO:0006914
Vvi19g0500 898 Pfam WD domain, G-beta repeat 403 432 IPR001680 GO:0005515
Vvi19g0500 898 Gene3D - 89 516 IPR015943 GO:0005515
Vvi19g0500 898 SMART WD40_4 456 497 IPR001680 GO:0005515
Vvi19g0500 898 SMART WD40_4 399 439 IPR001680 GO:0005515
Vvi19g0500 898 MobiDBLite consensus disorder prediction 832 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0500 Vvi-Chr19 5485499 5495235 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0500 - - vvi:100265881 1740.7