Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0495 ATGCATGATGTAGTTCGCGATGTTGCTATTTGGATCGCATCTTCCCTGGAGGATGGATGTAAATCCCTTGCTCGATCAGGAATCAGTTTGACTGAGATTTCAAAATTTGAGTTGTCACAGTCTCTCCGGAGAATGTCTTTCATGTACAACAAATTAACAGCATTACCTGATAGAGAAATACAGTCTTGCCCAGGGGCCTCCACTTTACTTGTACAGAATAATCGCCCCCTTGAGATAGTTCCCGTGGAATTCCTGCTTGGATTTCAAGCACTCAGGGTCTTGAATCTAAGTGAAACCCGCATCCAGCGATTGCCTCTCTCCCTCATCCACCTTGGTGAACTTCGTGCCCTTTTATTAAGCAAATGTGTTAGGCTCAATGAACTACCCCCTGTGGGGCGGCTTAGTAAACTACAAGTGCTTGATTGCAGCTACACTAATATCAAGGAATTGCCAGCAGGGCTAGAGCAGCTGAGCAACTTACGGGAATTAAACTTGTCATGCACTGATGGGTTGAAAACCTTCCGAGCAGGATTGGTATCAAGGTTGTCTAGTTTAGAGATTCTAGACATGAGAGACAGTAGCTATAGATGGTGTCCGAAGACAGAGACAAACGAGGGAAAAGCAACACTTGAGGAGCTAGGATGCCTGGAGCGATTAATTGGTTTAATGGTAGACTTGACTGGCTCCACATATCCCTTTTCGGAATATGCTCCTTGGATGAAACGATTGAAAAGCTTTAGAATTAGTGTATCTGGAGTTCCATGCTATGTTTGGACAGACCAATTGTTTTTCATGAAGGAAGTATCTGGAGTTCCGTTCATGAATAGTTTTAAGAATGATGGAAATTTTGAGGAAAGAGAGGTTCTACTTTCCAGACTGGATCTGTCAGGCAAATTGAGTGGATGGTTGTTAACATATGCGACAATTCTTGTACTGGAATCATGCAAGGGGTTAAATAATCTGTTTGATAGTGTTGGGGTCTTTGTTTATCTCAAGTCACTTTCTATTTCATCTTCCAACGTCAGGTTTAGGCCACAAGGAGGATGCTGTGCCCCAAATGACCTACTTCCAAATCTGGAGGAACTTTACCTCAGTTCTCTCTATTGCCTAGAGAGCATTTCAGAATTAGTCGGGACTCTTGGACTCAAATTCTCAAGGCTAAAAGTGATGAAGGTGCTCGTTTGTGAGAAACTAAAGTATCTTCTCTCTTGTGATGATTTTACTCAACCCTTAGAAAAGCTGGAAATAATTGATTTACAAATGTGTGAAGATTTGAATGATATGTTCATACACAGTTCAGGGCAGACCTCAATGTCATATCCTGTTGCTCCAAACTTGCGGGAAATACACTTCAAAAGGCTTCCCAAATTGAAGACTTTAAGCAGACAAGAAGAAACATGGCAACATCTAGAGCATATTTATGTGGAAGAGTGTAAAAGTCTGAAGAAGCTACCTCTGAATGAGCAAAGTGCAAATACCTTGAAAGAGATAAGAGGAGACATGGAGTGGTGGAAGCAATTGGAGTGGGATGATGACTTTACCAGCTCCACTCTCCAGCCTCTTTTCAAAGGTCCAAGCTACTACTAG 1587 0.4216 MHDVVRDVAIWIASSLEDGCKSLARSGISLTEISKFELSQSLRRMSFMYNKLTALPDREIQSCPGASTLLVQNNRPLEIVPVEFLLGFQALRVLNLSETRIQRLPLSLIHLGELRALLLSKCVRLNELPPVGRLSKLQVLDCSYTNIKELPAGLEQLSNLRELNLSCTDGLKTFRAGLVSRLSSLEILDMRDSSYRWCPKTETNEGKATLEELGCLERLIGLMVDLTGSTYPFSEYAPWMKRLKSFRISVSGVPCYVWTDQLFFMKEVSGVPFMNSFKNDGNFEEREVLLSRLDLSGKLSGWLLTYATILVLESCKGLNNLFDSVGVFVYLKSLSISSSNVRFRPQGGCCAPNDLLPNLEELYLSSLYCLESISELVGTLGLKFSRLKVMKVLVCEKLKYLLSCDDFTQPLEKLEIIDLQMCEDLNDMFIHSSGQTSMSYPVAPNLREIHFKRLPKLKTLSRQEETWQHLEHIYVEECKSLKKLPLNEQSANTLKEIRGDMEWWKQLEWDDDFTSSTLQPLFKGPSYY* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0495 528 Pfam Leucine Rich repeats (2 copies) 136 167 IPR025875 -
Vvi19g0495 528 Gene3D Ribonuclease Inhibitor 280 512 IPR032675 -
Vvi19g0495 528 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1 485 - -
Vvi19g0495 528 SUPERFAMILY L domain-like 2 498 - -
Vvi19g0495 528 Gene3D Ribonuclease Inhibitor 14 267 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0495 Vvi-Chr19 5423967 5430258 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0495 K13459 - vvi:100247069 977.622