Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0489 ATGGCAGGGAATCAACAGCTGAAAGAGTCTAGAGTTGTGAAGGTAGATTCAGAGGAATCCTGGGATTTGTTCTTCTCGCAAGCTACAAATCAGGGCTGCCCAGTTGTGGTTCATTTTACTGCTGCTTGGTGCATTCCCTCTGTGGCCATGACTGCTGTTTTTGAAGATCTGGCCTTAAATTACCAAGACATGCTGTTTCTAGTGGTGGATGTGGACGAGGTTAAGGAGGTGGCATCCAAGCTGGAGATAAAGGCCATGCCCACCTTTCTGCTGATGAGGGAAGGGGCTCAGGTGGACAAGCTTGTTGGGGCTAACCCGGACGAGATCAGGAAAAGGACTGAGGCTTTTATTCGCTCCTCTCGCTCCCATAAAATGACTTGA 381 0.4908 MAGNQQLKESRVVKVDSEESWDLFFSQATNQGCPVVVHFTAAWCIPSVAMTAVFEDLALNYQDMLFLVVDVDEVKEVASKLEIKAMPTFLLMREGAQVDKLVGANPDEIRKRTEAFIRSSRSHKMT* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0489 126 Pfam Thioredoxin 25 111 IPR013766 -
Vvi19g0489 126 ProSiteProfiles Thioredoxin domain profile. 1 118 IPR013766 -
Vvi19g0489 126 Gene3D Glutaredoxin 2 123 - -
Vvi19g0489 126 PANTHER THIOREDOXIN 12 114 - -
Vvi19g0489 126 CDD TRX_family 25 111 - -
Vvi19g0489 126 SUPERFAMILY Thioredoxin-like 9 117 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0489 Vvi-Chr19 5398538 5399249 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0489 K03671 - vvi:100248576 250.751