Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0482 ATGGCAGGCAGAGGCAAAACCCTAGGTTCTGGCGCCGCCAAGAAGGCTACATCTCGTAGTAGTAAGGCCGGCCTTCAATTCCCTGTGGGTCGTATCGCTCGTTTTCTCAAAGCCGGTAAGTACGCCGAGCGTGTAGGCGCCGGGGCTCCCGTCTACTTGGCCGCTGTCCTCGAATACCTAGCCGCCGAGGTGTTGGAATTGGCCGGAAACGCCGCAAGGGACAACAAAAAGACTCGGATCGTGCCACGACACATCCAATTGGCGGTGAGAAACGACGAGGAGCTGAGCAAGTTGCTCGGAGATGTGACGATCGCAAACGGTGGTGTGATGCCCAACATTCACAACCTTCTTCTGCCGAAGAAGGCCGGCGGATCGTCAAAAGCCTCAGGCGGTGACGACGATAGTTAA 408 0.5686 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGGSSKASGGDDDS* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0482 135 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 Pfam Core histone H2A/H2B/H3/H4 13 90 IPR007125 GO:0003677
Vvi19g0482 135 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Vvi19g0482 135 FunFam Histone H2A 1 129 - -
Vvi19g0482 135 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Vvi19g0482 135 PANTHER HISTONE H2A 11 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi19g0482 135 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Vvi19g0482 135 SUPERFAMILY Histone-fold 9 124 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0482 Vvi-Chr19 5356531 5357057 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0482 K11251 - gmx:100810491 207.608