Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0477 ATGGCAGCCATGGCTGCTCTGCAGAGCTCATTCACTTCGCTTTCTCTCTCCTCCAACTCTTTCTTAGGCCAACCCTTCTCTCCCCTTCTTTATCCTTCTCTGGCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGCTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTACATAAAATGCATGTTAAGGTGGGAGATACAGTGAAAATAATATCTGGTAGGGAAAAGGGTAGAACTGGGGAGATCAGTAAGATATTTAGGCATAACAGCACTGTGGTGGTGAAAGACATAAACTTGAAGACAAAACATGTGAAGGGCAGAGGAGAGGACGAGCCTGGACAGATAATCAAGATTGAAGCGCCTATCCACAGCTCAAATGTGATGCTCTACTCCAAAGAACAGAATGTGGCTAGCCGGGTAGGTCATAAAATCCTAGAGAATGGAAAACGCGTTCGCTACCTCATAAAAACTGGGGAAATAATTGACAGTGCAGAGAATTGGGAGAGAGTGGTCAAAGACAAAGAGAAGACTGAAGTAGCTGCTGCTGCTTCTTGA 576 0.4583 MAAMAALQSSFTSLSLSSNSFLGQPFSPLLYPSLAKSTEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIFRHNSTVVVKDINLKTKHVKGRGEDEPGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKILENGKRVRYLIKTGEIIDSAENWERVVKDKEKTEVAAAAS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0477 191 NCBIfam 50S ribosomal protein L24 66 168 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g0477 191 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 2 184 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g0477 191 CDD KOW_RPL26 72 136 IPR041988 GO:0003723
Vvi19g0477 191 Hamap 50S ribosomal protein L24 [rplX]. 67 163 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g0477 191 ProSitePatterns Ribosomal protein L24 signature. 72 89 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vvi19g0477 191 SMART kow_9 68 95 IPR005824 -
Vvi19g0477 191 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 104 168 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g0477 191 SUPERFAMILY Translation proteins SH3-like domain 65 167 IPR008991 -
Vvi19g0477 191 Gene3D - 62 167 IPR014722 -
Vvi19g0477 191 Pfam KOW motif 71 102 IPR005824 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0477 K02895 - vvi:100250357 368.622