Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0474 ATGTTAAGCTTGTATGAAGCCACACATTTCAGGGTGCATGGAGAAGATATATTAGATGAAGCACTTGCTTTCACTACCACTCACCTTCAGTCCGCCACAAAGCACTCTTCAAATCCTCTTGCTGAACAAGTAGTTCATGCCCTGAAGCAGCCCATCCGAAAGGGGTTACCTAGGCTAGAGGCCAGGCATTATTTTTCTGTGTACCAAGCAGATGATTCTCATAACAAAGCTCTGCTGAAGCTAGCAAAGTTGGATTTCAACCTATTACAGAAATTACACCAGAAGGAGCTAAGTGACATTTCCGCGTGGTGGAAAGATTTAGACTTTGCACACAAGCTTCCTTTTGCAAGAGATCGGGTGGTGGAATGCTACTTTTGGATATTGGGGGTGTACTTTGAGCCCCAGTTTTTCTTCGCTAGAAGGATTCTCACTAAAGTAATAGCCATGACCTCTATTATTGATGACATCTATGACGTGTATGGTACACTTGAAGAACTCGAGCTCTTCACCGAAGCAGTTGAGAGGTGGGATATCAGTGCCATAGATCAACTGCCAGAGTACATGAGAGTGTGTTATCAAGCACTCTTATATGTATACAGTGAAATTGAGGAAGAAATGGCCAAGGAAGGAAGATCGTATCGGCTCTACTATGCAAAAGAAGCAATGAAAAATCAAGTAAGAGCATACTATGAGGAAGCCAAATGGCTTCAAGTGCAACAAATTCCAACCATGGAGGAGTACATGCCTGTGGCGTTAGTTACCTCTGCATACTCAATGCTGGCGACCACATCGTTTGTTGGAATGGGAGATGCTGTGACAAAAGAAAGCTTCGATTGGATTTTCAGTAAGCCTAAGATTGTAAGGGCTTCAGCCATAGTTTGCAGGCTCATGGATGATATGGTTTCCCACAAGTTTGAGCAGAAGAGAGGACATGTTGCCTCAGCTGTTGAATGTTACATGAAGCAACATGGTGCGTCGGAGCAGGAAACGCACAACGAATTTCACAAACAAGTAAGAGATGCATGGAAGGATATCAATGAAGAGTGCCTCATCCCAACAGCTGTCCCAATGCCCATCCTCATGCGAGTTCTAAATCTCGCACGTGTTATAGATGTTATATACAAGAATGAAGATGGCTATACTCATTCTGGGACTGTTCTAAAGGATTTCGTAACTTCCATGCTAATTGATCCTGTGCCAATATGA 1206 0.4328 MLSLYEATHFRVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVSHKFEQKRGHVASAVECYMKQHGASEQETHNEFHKQVRDAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHSGTVLKDFVTSMLIDPVPI* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0474 401 SUPERFAMILY Terpenoid synthases 74 399 IPR008949 -
Vvi19g0474 401 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 1 74 IPR008930 -
Vvi19g0474 401 Gene3D Farnesyl Diphosphate Synthase 89 401 IPR008949 -
Vvi19g0474 401 CDD Terpene_cyclase_plant_C1 1 398 IPR044814 GO:0010333|GO:0016102
Vvi19g0474 401 PANTHER OS04G0344100 PROTEIN-RELATED 1 397 - -
Vvi19g0474 401 FunFam Isoprene synthase, chloroplastic 25 389 - -
Vvi19g0474 401 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 74 400 - -
Vvi19g0474 401 Pfam Terpene synthase, N-terminal domain 1 48 IPR001906 GO:0010333|GO:0016829
Vvi19g0474 401 SFLD Isoprenoid Synthase Type I 74 400 - -
Vvi19g0474 401 Gene3D - 1 88 IPR036965 GO:0010333|GO:0016829
Vvi19g0474 401 Pfam Terpene synthase family, metal binding domain 79 344 IPR005630 GO:0000287|GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0474 Vvi-Chr19 5255813 5257522 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0474 K15803 K23172 vvi:100232954 787.334