Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0471 ATGTCTGTTCAGTCTTCAGTGGTACTTCTTGCTCCATCTAAAAACCTCAGCCCTGAGGTTGGCCGGCGCTGTGCAAATTATCATCCCAGCATTTGGGGGGATCATTTCCTTTCTTATGCTTCTGAATTCACAAACACTGATGATCATTTGAAGCAACATGTCCAACAGCTGAAAGAAGAAGTGAGGAAGATGCTAATGGCTGCTGATGATGATTCTGTGCAAAAGTTGCTCTTGATCGATGCAATTCAACGGCTAGGAGTTGCTTACCATTTTGAGAGTGAGATTGATGAAGCATTAAAACACATGTTCGATGGTTCCGTTGCCTCTGCTGAAGAAGATGTTTATACTGCTTCTCTCCGATTTCGGTTACTAAGACAACAAGGTTACCATGTCTCATGTGATTTATTCAACAACTTCAAGGATAATGAAGGAAACTTCAAGGAATCCCTCAGCAGCGATGTGCGGGGAATGTTAAGCTTGTATGAAGCTACACACCTCAGGGTGCATGGAGAAGATATATTAGATGAAGCACTCGCTTTCACTACCACTCACCTTCAGTCCGCAGCAAAATACTCTTTAAATCCTCTTGCTGAACAAGTAGTTCATGCCCTAAAGCAGCCCATCCGAAAGGGGTTACCTAGGCTAGAGGCCAGGCATTATTTTTCCATATACCAAGCAGATGATTCTCATCATAAAGCTCTGCTGAAGCTAGCAAAGTTGGATTTCAACCTATTACAGAAATTACACCAGAAGGAACTAAGTGATATTTCCGCGTGGTGGAAAGATTTAGACTTCGCACACAAGCTTCCTTTTGCAAGAGATCGAGTGGTGGAGTGCTACTTCTGGATATTGGGGGTGTACTTTGAGCCCCAGTTTTTCTTGGCTAGAAGGATACTTACTAAAGTAATAACCATGACTTCTACTATTGATGACATCTATGACGTGTATGGTACACTTGAAGAACTCGAGCTCTTCACTGAAGCAGTTGAGAGGTGGGACATCAGTGTCATAGATCAACTACCAGAGTACATGAGAGTGTGTTATCGAGCACTCTTAGATGTATACAGTGAAATTGAGGAAGAAATGGCCAAGGAAGGAAGATCATATCGGTTCTACTATGCGAAAGAAGCAATGAAAAAGCAAGTTAGAGCATACTATGAGGAAGCCCAATGGCTTCAAGCACAACAAATACCAACCATGGAGGAGTATATGCCTGTTGCATCAGCTACCTCTGGATACCCGATGCTTGCAACCACATCCTTTATTGCGATGGGGGATGTTGTGACAAAAGAAACTTTCGATTGGGTTTTCAGTGAGCCTAAGATTGTCAGGGCTTCAGCCACAGTTTCCAGGCTCATGGATGATATGGTTTCCCACAAGTTTGAACAAAAGAGAGGACATGTTGCCTCAGCTGTTGAATGTTACATGAAGCAACATGGTGCGTCGGAGCAGGAAACACGCGACGAATTTAAAAAACAAGTAAGAGACGCATGGAAGGATATCAATCAAGAGTGCCTCATGCCAACAGCTGTTCCGATGACCGTCCTCATGCGAATTCTGAATCTTGCACGTGTTATGGATGTTGTATATAAGCATGAAGATGGCTATACCCATTCCGGGACTTTTCTAAAGGATTTAGTAACCTCCCTGCTTATAGATTCTGTGCCAATATGA 1674 0.4307 MSVQSSVVLLAPSKNLSPEVGRRCANYHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAADDDSVQKLLLIDAIQRLGVAYHFESEIDEALKHMFDGSVASAEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHLRVHGEDILDEALAFTTTHLQSAAKYSLNPLAEQVVHALKQPIRKGLPRLEARHYFSIYQADDSHHKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFLARRILTKVITMTSTIDDIYDVYGTLEELELFTEAVERWDISVIDQLPEYMRVCYRALLDVYSEIEEEMAKEGRSYRFYYAKEAMKKQVRAYYEEAQWLQAQQIPTMEEYMPVASATSGYPMLATTSFIAMGDVVTKETFDWVFSEPKIVRASATVSRLMDDMVSHKFEQKRGHVASAVECYMKQHGASEQETRDEFKKQVRDAWKDINQECLMPTAVPMTVLMRILNLARVMDVVYKHEDGYTHSGTFLKDLVTSLLIDSVPI* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0471 557 SFLD Terpene Cyclase Like 1 C Terminal Domain 232 556 IPR034741 -
Vvi19g0471 557 SUPERFAMILY Terpenoid synthases 230 554 IPR008949 -
Vvi19g0471 557 FunFam Isoprene synthase, chloroplastic 70 230 - -
Vvi19g0471 557 Gene3D Farnesyl Diphosphate Synthase 29 545 IPR008949 -
Vvi19g0471 557 FunFam Isoprene synthase, chloroplastic 213 545 - -
Vvi19g0471 557 Coils Coil 375 395 - -
Vvi19g0471 557 CDD Terpene_cyclase_plant_C1 22 553 IPR044814 GO:0010333|GO:0016102
Vvi19g0471 557 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 232 556 - -
Vvi19g0471 557 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 28 230 IPR008930 -
Vvi19g0471 557 Pfam Terpene synthase family, metal binding domain 235 500 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g0471 557 PANTHER OS04G0344100 PROTEIN-RELATED 20 542 - -
Vvi19g0471 557 Gene3D - 70 230 IPR036965 GO:0010333|GO:0016829
Vvi19g0471 557 Pfam Terpene synthase, N-terminal domain 31 204 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0471 Vvi-Chr19 5229153 5232162 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0471 K15803 K23172 vvi:100257265 1106.28