Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0463 ATGTCTCTTCCACTCTCAGTTACAGCTCCTAGTCCAACCCAAAGGCTTAATCCTGAGGTGGCTCGCCGCAGTGCAAATTTTCGTCCTTGCTTTTGGGGTGATCGTTTCCTCACCTATACTCCTGATGATCCGGTAACCCATGCTCGTAAAGTGCAACAAATTGAAGAACTGAAAGATGAACTGAGAAACGAGCTAAAAGCTACTGCCAGGAAGTCTTCACAACTGCTGAACTTCATAGATTCCATCCAACGCTTGGGATTGGCATACCAGTTTGAAAGGGAGATCAAAGAAGCATTAGAGGACATGTATCAAACCTATAATCTGGATGATGATGATAATGATGACCTGACCAATGCTTCTCTTCGTTTCCGACTTCTGAGGCAAGAAGGTTACCATATTCCACCTGATGTATTCAATAAGTTCAAAGACGACGAAGGCAACTTCAAGGAATCATTGACTGGTGACTTACCAGGCTTGCTAGCTTTATACGAAGCTACACATTTAATGGCGCATGGAGAAGCCATACTAGAGGAAGCTCTGGCTTTCAGCACTGCTCACCTTCAGTCCATGGCAACCGATTCAACTCATCCCCTTCCAGCACAAGTGACTCGTGCACTAAAGAGGCCTATTCGCAAGTGCTTAACAAGGGTGGAGGCAAGACATTACATTTCCGTCTACCAAGAAGATGGTCCGCATAATAAAACATTACTCAAGCTCTCAAAGTTAGATTTCAATCTATTGCAGTCACTCCACAGGAAAGAGCTAAGTGAGGTCACTAGGTGGTGGAAAGGTTTGAATTTTGCCAAAAAGATGCCTTTTGCACGGGACAGATTAGTGGAGGGCTACTTCTGGATATTGGGAGTGTACTTTGAACCCCAATATTCCCTTGCTAGAAGGATCTTAATCAAAGTATTAGCCATGATATCCATCATAGATGATATATATGATGCATATGGTACATTCGAAGAACTCAAACTCTTTACAGAAGCAATTGAAAGATGGGATGCCAGCAGCGTAGATCAACTCCCAGATTATATGAAGCCTTGTTATCAGGCTCTCTTGGATGTTTATGAAGAAATGGAGGAAGAGATAGCCAAGGAAGGAAACCTGTACCGTGTTCAATATGCAAAAGCAGCGATACAAAGGCAAATCCAAGCCTACTTTGTTGAAGCCAAATGGTTGAACCAAGAATATACACCAACATTGGATGAGTATATGAGTAACGCACTAGTAAGCAGTGGTTACTCTATGCTCATAACCACATCTTTTGTTGGCATGGGAGATATAGCAACAAAGGAGGCCTTCGATTGGGTTTTCAGCGACCCTAAGATGGTTAGAGCTTCATCTGTCATTTGCAGGCTCATGGATGACATAGTTTCCCATGAGTTTGAGCAAAAAAGAGGGCATGTTGCATCAGCAGTTGAATGCTACATGAAGCAACGTGGGGTTTGTAAGCAAGAAGCATATGATGAGTTGAATAAGCAAGTAGTGAACGGATGGAAGGACATGAATGAGGAGTGCCTCAAACCTACACAAGTGCCCATGCCTCTTCTTACACGTGTTCTTAATTTCAGCCGTGTGATTGATATTTTGTATAAGGACGAAGATCAGTACACACATGTTGGAAAATTGATGAAAGATCTCATTGCTTCGATTCTCATTGACCTTGTGCCAATATGA 1680 0.4274 MSLPLSVTAPSPTQRLNPEVARRSANFRPCFWGDRFLTYTPDDPVTHARKVQQIEELKDELRNELKATARKSSQLLNFIDSIQRLGLAYQFEREIKEALEDMYQTYNLDDDDNDDLTNASLRFRLLRQEGYHIPPDVFNKFKDDEGNFKESLTGDLPGLLALYEATHLMAHGEAILEEALAFSTAHLQSMATDSTHPLPAQVTRALKRPIRKCLTRVEARHYISVYQEDGPHNKTLLKLSKLDFNLLQSLHRKELSEVTRWWKGLNFAKKMPFARDRLVEGYFWILGVYFEPQYSLARRILIKVLAMISIIDDIYDAYGTFEELKLFTEAIERWDASSVDQLPDYMKPCYQALLDVYEEMEEEIAKEGNLYRVQYAKAAIQRQIQAYFVEAKWLNQEYTPTLDEYMSNALVSSGYSMLITTSFVGMGDIATKEAFDWVFSDPKMVRASSVICRLMDDIVSHEFEQKRGHVASAVECYMKQRGVCKQEAYDELNKQVVNGWKDMNEECLKPTQVPMPLLTRVLNFSRVIDILYKDEDQYTHVGKLMKDLIASILIDLVPI* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0463 559 Gene3D - 70 232 IPR036965 GO:0010333|GO:0016829
Vvi19g0463 559 CDD Terpene_cyclase_plant_C1 22 555 IPR044814 GO:0010333|GO:0016102
Vvi19g0463 559 Pfam Terpene synthase family, metal binding domain 237 502 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g0463 559 Coils Coil 47 74 - -
Vvi19g0463 559 SFLD Isoprenoid Synthase Type I 232 556 - -
Vvi19g0463 559 Coils Coil 350 370 - -
Vvi19g0463 559 Gene3D Farnesyl Diphosphate Synthase 29 547 IPR008949 -
Vvi19g0463 559 Pfam Terpene synthase, N-terminal domain 32 206 IPR001906 GO:0010333|GO:0016829
Vvi19g0463 559 SUPERFAMILY Terpenoid synthases 232 555 IPR008949 -
Vvi19g0463 559 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 232 556 - -
Vvi19g0463 559 PANTHER OS04G0344100 PROTEIN-RELATED 19 540 - -
Vvi19g0463 559 FunFam Isoprene synthase, chloroplastic 199 547 - -
Vvi19g0463 559 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 231 IPR008930 -
Vvi19g0463 559 FunFam Isoprene synthase, chloroplastic 70 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0463 Vvi-Chr19 5156208 5159103 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0463 K15803 - vvi:100241877 1116.29