Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0462 ATGGCAAAGGAACATGAGACTATAGCAAAGTCTAAAATCTTGTCTATTTTCAAGGACTCTTACATGATAAGGTTTCACATGGGTTTCTTCTCCAACCAAAATATGTCTCTTCCACTCTCAGTTACAGCTCCTATTCCAACCCAAAGGCTTAATCCTGAGGCGGCTCGCCGCAGTGCAAATTTTCGTCCTTGCTTTTGGGGTGATCGTTTCCTCACCTATACTCCTGCTGATCCGGTAACCCATGCTCGTAAAGTGCAACAAATTGAAGAACTGAAAGATGAACTGAGAAACGAGCTAAAAGCTACTGCCAGGAAGTCTTCACAACTGCTGAACTTCATAGATTCCATCCAACGCTTGGGATTGGCATACCAGTTTGAAAGGGAGATCAAAGAAGCATTAGAGGACATGTATCAAACCTATAATCTGGATGATGATGATAATGATGACCTGACCAATGCTTCTCTTCGTTTCCGACTTCTAAGACAAGAAGGTTACCATATTCCACCTGATGTATTCAATAAGTTCAAAGACGACGAAGGCAACTTCAAGGAATCATTGACTGGTGACTTACCAGGCTTGCTAGCTTTATACGAAGCTACACATTTAATGGTGCATGGAGAAGACATACTAGAGGAAGCTCTGGCTTTCAGCACTGCTCACCTTCAGTCCATGGCAACCGATTCAACTCATCCCCTTGCAGCACAAGTGACTCGTGCACTAAAGAGACCTATTCGCAAGTGCTTAACAAGGGTGGAGGCAAGACATTACATTTCCGTCTACCAAGAAGATGGTCCGCATAATAAAACATTACTCAAGCTCTCAAAGTTAGATTTCAATCTATTGCAGTCACTCCACAGGAAAGAGCTAAGTGAGGTCACTAGGTGGTGGAAAGGTTTGAATTTTGCCAAAAAGATGCCTTTTGCACGGGACAGATTAGTGGAGGGCTACTTCTGGATATTGGGAGTGTATTTTGAACCCCAATATTCCCTTGCTAGAAGGATCTTAATCAAAGTATTAGCCATGATATCCATCATAGATGATATATATGATGCATATGGTACATTCGAAGAACTCAAACTCTTTACAGAAGCAATTGAAAGATGGGATGCCAACAGCGTAAATCAACTCCCAGATTATATGAAGCCTTGTTATCAGGCTCTCTTGGATGTTTATGAAGAAATGGAAGAAGAGATGGCCAAGGAAGGAAACTTGTACCGTGTTCAATATGCAAAAGCAGCGATAGAAAGGCAAATCCAAGCCTACTTTGTTGAAGCCAAATGGTTGAACCAAGAATATACACCAACATTGGATGAGTATATGAGTAACGCACTAATAAGCAGTGGTTACTCTATGCTCATGACCACATCTTTTGTTGGCATGGGAGATATAGCAACAAAGGAGGCCTTCGATTGGGTTTTCAACGACCCTAAGATGGTTAGAGCTTCATCTGTCATTTGCAGGCTCATGGATGACATAGTTTCCCATGAGTTTGAGCAAAAAAGAGGGCATGTTGCATCAGCAGTTGAATGCTACATGAAGCAACATGGGGTTTGTAAGCAAGAAGCATATGATGAGTTGAATAAGCAAGTAGTGAACGCATGGAAGGATATGAATAAGGAGTGCCTCAAACCTACACAAGTGCCCATGCCTCTTCTTACTCGTGTTCTTAATTTCAGTCGTGTGATTGATATTTTGTATAAGGACGAAGATCAGTACACACATGTTGGAAAATTGATGAAAGATCTCATTGCTTCGATTCTCATTGACCCTGTGCCAATATGA 1782 0.4164 MAKEHETIAKSKILSIFKDSYMIRFHMGFFSNQNMSLPLSVTAPIPTQRLNPEAARRSANFRPCFWGDRFLTYTPADPVTHARKVQQIEELKDELRNELKATARKSSQLLNFIDSIQRLGLAYQFEREIKEALEDMYQTYNLDDDDNDDLTNASLRFRLLRQEGYHIPPDVFNKFKDDEGNFKESLTGDLPGLLALYEATHLMVHGEDILEEALAFSTAHLQSMATDSTHPLAAQVTRALKRPIRKCLTRVEARHYISVYQEDGPHNKTLLKLSKLDFNLLQSLHRKELSEVTRWWKGLNFAKKMPFARDRLVEGYFWILGVYFEPQYSLARRILIKVLAMISIIDDIYDAYGTFEELKLFTEAIERWDANSVNQLPDYMKPCYQALLDVYEEMEEEMAKEGNLYRVQYAKAAIERQIQAYFVEAKWLNQEYTPTLDEYMSNALISSGYSMLMTTSFVGMGDIATKEAFDWVFNDPKMVRASSVICRLMDDIVSHEFEQKRGHVASAVECYMKQHGVCKQEAYDELNKQVVNAWKDMNKECLKPTQVPMPLLTRVLNFSRVIDILYKDEDQYTHVGKLMKDLIASILIDPVPI* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0462 593 Gene3D Farnesyl Diphosphate Synthase 63 581 IPR008949 -
Vvi19g0462 593 PANTHER OS04G0344100 PROTEIN-RELATED 54 582 - -
Vvi19g0462 593 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 266 592 - -
Vvi19g0462 593 FunFam Isoprene synthase, chloroplastic 104 266 - -
Vvi19g0462 593 FunFam Isoprene synthase, chloroplastic 221 581 - -
Vvi19g0462 593 CDD Terpene_cyclase_plant_C1 56 590 IPR044814 GO:0010333|GO:0016102
Vvi19g0462 593 Gene3D - 104 266 IPR036965 GO:0010333|GO:0016829
Vvi19g0462 593 SUPERFAMILY Terpenoid synthases 266 591 IPR008949 -
Vvi19g0462 593 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 63 265 IPR008930 -
Vvi19g0462 593 SFLD Terpene Cyclase Like 1 C Terminal Domain 266 592 IPR034741 -
Vvi19g0462 593 Coils Coil 384 404 - -
Vvi19g0462 593 Coils Coil 81 108 - -
Vvi19g0462 593 Pfam Terpene synthase, N-terminal domain 66 240 IPR001906 GO:0010333|GO:0016829
Vvi19g0462 593 Pfam Terpene synthase family, metal binding domain 271 536 IPR005630 GO:0000287|GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0462 Vvi-Chr19 5138070 5153191 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0462 K15803 K23172 vvi:100264159 1110.52