Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0457 ATGGCAGTCTTGCTGGTCCTGATTTTGATGAGCTGTCTCTTCATGAACTCCGAATCCATCAGCAGAGTTGATTTCCCAGATGGGTTCATCTTTGGAACTGCTTCTTCAGCTTACCAGTTTGAAGGAGCTGTGGATGAAGGAAACAAGGGAGTTAGCATATGGGATACTTTCACAAGGCAACCAGGGAGGATCCTGGATTTCAGCAATGCAGATATGGCAGTCGACCAATATCACCGGTTTAAGACTGATATAGACTTGATGAAGGATTTGGGAATGGATGCTTACAGATTCTCAATATCATGGTCAAGAATTTTTCCTAAAGGTACAGGAGAACCGAATCTGGAAGGAATAGAATACTACAACAGTCTTATAGATGCTTTACTTGAAAAAGGAATTCAACCCTATGTAACTCTCTATCATTGGGATCTTCCACAGATGCTTGAAGATAGATATGAAGGATGGTTAAGCAAACAGATAGTAAAAGACTTCGAGTATTATGCCTCTACCTGCTTCCAAGCTTTTGGAGATAGAGTCAAGAACTGGATCACCTTTAATGAACCCCACGGTTTCGCACTCCAAGGTTATGACACAGGTCTTCAAGCTCCTGGGAGGTGCTCCATTCTTGGGCATTTGTTCTGCAAGACAGGAGAATCCTCCACTGAACCATACATTGTAGCTCACAACATCCTCTTGTCTCATGCTGCAGCTTATCATAATTACCAGCTCCATTTCAAGGAAAGTCAAGGGGGTCTAATTGGAATGGCACTGGATGCCAAATGGTATGAACCGATATCTGATAGTGATGAGGACAAAGATGCTGCACGTAGGGCAATGGACTTTGGAATCAGATGGTTCCTTGATCCACTTTTCTTCGGTGAATATCCACTGTCAATGCAGAGGCTTGTGGGAAAGAGACTACCAGAGATCTCACCAAAAACAGCCAAGTTTCTGTTGGGGTCCTTGGATTTTGTTGGCATAAATCATTATACCACATTATATGCCCGGAATGACAGGACACGAATTAGGAAATTCATATTGCGGGATGCTTCATCTGATGCAGCGGTTATTACTACCTCTTTTCGAGGTGGAGAAGCTATTGGAGAACGAGCAGCTTCTCGCTGGCTACACATTGTGCCATGGGGCATCCGAAAGTTAGCTCGATATGTGAAAGATAATTATGGCAATCCACCGGTTATTATAACTGAAAATGGCATGGATGACCCAAATAGAGGTTCTATACCTTTAGAGAAGGCTTTGCAGGATGACAAGAGGATAAACTTTCACAGGGACTATCTCACAAACTTATCTGCTGCTATAAGGCAAGACAACTGTGATGTGCGTGGTTATTTTGTGTGGTCTTTGCTTGACAACTGGGAGTGGAACTTGGGCTATTCTGTCCGTTTTGGACTCTACTTTGTGGACTACAAGAATAACCTTACAAGGATTCCAAAGACCTCCGTTCAGTGGTTTAGACGTATTCTCAGATCCAACAGTGGTCTGAGAAACCAGTTTTAG 1515 0.431 MAVLLVLILMSCLFMNSESISRVDFPDGFIFGTASSAYQFEGAVDEGNKGVSIWDTFTRQPGRILDFSNADMAVDQYHRFKTDIDLMKDLGMDAYRFSISWSRIFPKGTGEPNLEGIEYYNSLIDALLEKGIQPYVTLYHWDLPQMLEDRYEGWLSKQIVKDFEYYASTCFQAFGDRVKNWITFNEPHGFALQGYDTGLQAPGRCSILGHLFCKTGESSTEPYIVAHNILLSHAAAYHNYQLHFKESQGGLIGMALDAKWYEPISDSDEDKDAARRAMDFGIRWFLDPLFFGEYPLSMQRLVGKRLPEISPKTAKFLLGSLDFVGINHYTTLYARNDRTRIRKFILRDASSDAAVITTSFRGGEAIGERAASRWLHIVPWGIRKLARYVKDNYGNPPVIITENGMDDPNRGSIPLEKALQDDKRINFHRDYLTNLSAAIRQDNCDVRGYFVWSLLDNWEWNLGYSVRFGLYFVDYKNNLTRIPKTSVQWFRRILRSNSGLRNQF* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0457 504 FunFam Beta-glucosidase 12 10 496 - -
Vvi19g0457 504 PANTHER GLYCOSYL HYDROLASE 24 498 IPR001360 GO:0004553|GO:0005975
Vvi19g0457 504 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 29 43 IPR033132 -
Vvi19g0457 504 Gene3D Glycosidases 11 496 - -
Vvi19g0457 504 Pfam Glycosyl hydrolase family 1 24 497 IPR001360 GO:0004553|GO:0005975
Vvi19g0457 504 SUPERFAMILY (Trans)glycosidases 12 495 IPR017853 -
Vvi19g0457 504 PRINTS Glycosyl hydrolase family 1 signature 320 334 IPR001360 GO:0004553|GO:0005975
Vvi19g0457 504 PRINTS Glycosyl hydrolase family 1 signature 443 460 IPR001360 GO:0004553|GO:0005975
Vvi19g0457 504 PRINTS Glycosyl hydrolase family 1 signature 467 479 IPR001360 GO:0004553|GO:0005975
Vvi19g0457 504 PRINTS Glycosyl hydrolase family 1 signature 421 432 IPR001360 GO:0004553|GO:0005975
Vvi19g0457 504 PRINTS Glycosyl hydrolase family 1 signature 398 406 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0457 Vvi-Chr19 5057354 5060329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0457 15 440 Glycoside Hydrolase AT5G54570 77.986 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0457 K01188 - vvi:100260663 1045.03