Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0450 ATGGATCTTCTGTGCAATGCGTACTCTACTCCTTCAGACGACGACGATGACGAACCACGACCAGTAGCAGAACCAACACCCCCTCCATTGAAGCGATTTAAACCCCAAAACCCTCCTCTCCTCCCCAAACCCTACCCTCTCATTGCTGGCAGATACATATCCAAGAGAGAGCGATCTCTCCTCAGCCCGGCCCTTTCTCCTCCCCTTCCGAATCCGGCTGCCTCTGCATCTCCTGTTATGGGTAGTATTTCAGATTCAGATCTACCACGTGATATCTTGTCATCATTGAGGCATCAAGCAAAGGGCCGTTCACAGCTAGGTCGAATATCTGAAAGGCTGTCCGTAGATTTGAAGAGCCACAAAAAGTCTGTCAATACTATTCAGTGGTCACCGACCCATGCCCATCTTCTTGCTTCCGCTGGAATGGATCATGCCATCTGCATATGGAATGCATGGAGTAGAGATCAGAAGAAAGCACGTGAATTCAGCTATCATAATGCAGCAGTGAAAGATGTCAAGTGGTTGCAGCAAGGATTATCTGTGCTTTCTTGTGGATATGACTGCTCGTCAAGATTAATTGATGTTGAGAAGGGGTTGCAAACTCAGATTTTTACAGAGGATCAGGTGGTTGGTGTCATAAAGCTCCATCCAGACAACTCCAACCTCTTCCTGTCTGGGGGATCAAAAGGACGCCTCAGATTATGGGATATTAGAACTGGCAAGGTAGTTCATGAATACATTCGAGGTCTTGGTCCAATACTTGACATTGAATTCACTGTTAATGCCAAACAATTTATCTCTTCCAGTGATGTGTCTGGAAGTAACATGAGTGAGAACTCTATTGTTGTTTGGGATGTCTCACGACAGGTTCCATTGTCTAATCAGGTTTATGTGGAAGCCTATACCTGTCCCTGCATTAGATGCCATCCATCTGATCCATTTTTCATTGCGCAATCAAATGGAAATTATATTGCAATCTTCTCGTCATGCCCTCCTTTCAAACTAGACAAGTACAAGAGGTATGAGAACCATGGGGTTTCTGGGTTCCCCATCAAGTGCAACTTCAGTTTGGATGGTGAGAAACTCGCCTCAGGCTCCTCGGATGGTTGTATATACCTTTATGACTACAGATCATCTGAACTTGTCCAAAAAATCAAGGCATATGAGCAAGCATGCATAGACGTTGCTTTCCATCCCCTCTTACCTAACGTGATTGCTGCATGCGGTTGGGATGGTGCGGTTTCAGTGTTTGAGTGA 1257 0.4551 MDLLCNAYSTPSDDDDDEPRPVAEPTPPPLKRFKPQNPPLLPKPYPLIAGRYISKRERSLLSPALSPPLPNPAASASPVMGSISDSDLPRDILSSLRHQAKGRSQLGRISERLSVDLKSHKKSVNTIQWSPTHAHLLASAGMDHAICIWNAWSRDQKKAREFSYHNAAVKDVKWLQQGLSVLSCGYDCSSRLIDVEKGLQTQIFTEDQVVGVIKLHPDNSNLFLSGGSKGRLRLWDIRTGKVVHEYIRGLGPILDIEFTVNAKQFISSSDVSGSNMSENSIVVWDVSRQVPLSNQVYVEAYTCPCIRCHPSDPFFIAQSNGNYIAIFSSCPPFKLDKYKRYENHGVSGFPIKCNFSLDGEKLASGSSDGCIYLYDYRSSELVQKIKAYEQACIDVAFHPLLPNVIAACGWDGAVSVFE* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0450 418 SUPERFAMILY WD40 repeat-like 109 417 IPR036322 GO:0005515
Vvi19g0450 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 245 IPR001680 GO:0005515
Vvi19g0450 418 MobiDBLite consensus disorder prediction 1 43 - -
Vvi19g0450 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Vvi19g0450 418 SMART WD40_4 110 150 IPR001680 GO:0005515
Vvi19g0450 418 SMART WD40_4 155 194 IPR001680 GO:0005515
Vvi19g0450 418 SMART WD40_4 239 285 IPR001680 GO:0005515
Vvi19g0450 418 SMART WD40_4 336 375 IPR001680 GO:0005515
Vvi19g0450 418 SMART WD40_4 197 236 IPR001680 GO:0005515
Vvi19g0450 418 SMART WD40_4 378 418 IPR001680 GO:0005515
Vvi19g0450 418 MobiDBLite consensus disorder prediction 23 43 - -
Vvi19g0450 418 Pfam WD domain, G-beta repeat 117 150 IPR001680 GO:0005515
Vvi19g0450 418 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 24 418 - -
Vvi19g0450 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
Vvi19g0450 418 Gene3D - 95 418 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0450 Vvi-Chr19 4992193 5005697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0450 193 399 Miscellaneous Gene Families AT5G08390 19.617 7.85e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0450 K24742 - vvi:100250407 817.764